Scomber japonicus (chub mackerel): 128381191
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Entry
128381191 CDS
T09718
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128381191
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128381191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
NACHT
FISNA
LRR_6
NOD2_WH
SPRY
PRY
LRR_1
LRR_4
AFG1_ATPase
LRR_8
Motif
Other DBs
NCBI-GeneID:
128381191
NCBI-ProteinID:
XP_053197114
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Position
20:complement(26697365..26710759)
Genome browser
AA seq
1207 aa
AA seq
DB search
MRMQKQRAASSVPSCVSLKSDWSMGHPLNFKDQCDSVERRKQKQRPASPVSSCVSLKSDW
SMGHPLNFKDRCESVERRVHQQKSETGCNQPDQQHQTDLDSIFMLLEENIVSFVKNELKR
FQRILSHPDFRECSEEWRKDESGVDSVEEEQRRSRREALVKITLHFLRKMRQDGLADCLQ
NRTNAAICQCKLKSNLENKFQCLFEGVAKAGDRTPLNQIYTHVCLTEGGTGEVNDEHEVR
QIEIASRKPARLETIIACKDLFHPLPERNQPVRTVMTKGVAGIGKTVLTQKFTLDWAEDK
ANQDIHFTFPFTFRELNALKEKKYSLVELVHHFFTETKEARICRFEEFHVVFIFDGLDEC
RLPLDFHNTEILTDVTESTSVDVLLTNLIRGKLLPSARLWITTRPAAANQIPPECVDMVT
EVRGFTDPQKEEYFKNRFRDEEQACTIISHIKTSRSLHIMCHIPVFCWITATVLEDVLKS
REGGELPKTLTEMYIHFLVVQSKLKNIKYDGGAETDPHWSPESRKMIESLGKLAFEQLLK
GNLIFYESDLTECGIDIRAASVCSGVFTEIFKEERGLYQDKVFCFVHLSLQEFLAALHVH
LTFINSGVNLLAEGPQSTPHRSRPDNPAVQLFYQTAVEKALKSQNGHLDLFLRFLLGLSV
QTNQTLLKGLLTKTESGSQTNQETIQYIKENIGQNVSAERSINLFHCLNELNDRSLVEEI
QQYLSSGSLSTDELSPTQWSALVFILLSAGEKLDVFDLRKYSASEEALLWLLPVVKASSK
SLLGGCNLSSRSCKALASILSSQSSSLRDLDLSYCDLEDSGXMARSLDLENPDCKLEALR
LNGCKLSWKSCQSLLSVICSQSSCLRELDLSNNNLQDSGLKRFSANFTLEILRLNGCNLS
SNSCEHLASVLSSEPSGLRELDLSNNDLQDVGVKLLSDGIESPHCKLEALSLSGCLITEE
GCESLASALRSNPSHLRELDLSYNHPGDSGVNILSAGLDDPHWRLDTLRLENCGVQQLKP
GLRKYACELTMDPNTAHRNLFLLENNIVVEKEEEEEQSYPHHPERFHFWYQLLCRNGVTG
RRYWEVLWNGLVSIGVTYRGIKRSGHGDDSRIGGNNRSWCLDCSAVSYFAWHNNKVKIIH
RPVPSSARNRVGVYVDWSAGTVSFYRVSSDTLIHIHTFHCTFTEPLYPAFRIRSEFTYGL
CNSLSLC
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcggatgcagaagcagagagcagcatcctctgtgcccagctgtgtgtccttaaagagt
gactggtcaatgggccatcctttaaattttaaagatcaatgcgactctgttgagagaagg
aagcagaagcagagaccagcttcccctgtatccagctgtgtgtccttaaagagtgactgg
tctatgggccatcctttaaattttaaagatcggtgtgagtctgttgagagaagagtccac
cagcaaaagtccgagactggttgtaatcagcctgaccagcagcatcaaacagacctggac
tccatatttatgcttcttgaagagaatattgtcagttttgttaagaatgagctgaagagg
ttccagaggattctgagtcatccagacttcagagaatgctcagaagagtggagaaaagat
gagagtggagtggacagtgtggaagaggagcagaggaggagcaggagggaggcgttggtg
aagatcacactacactttctcaggaaaatgaggcaggatgggctggctgactgtctgcag
aacagaactaatgctgctatctgccagtgcaaactcaaatctaatcttgagaataaattt
cagtgtttgtttgagggagttgctaaagccggagaccgaacacctctgaatcagatctac
acacatgtctgccttacagaaggagggactggagaggtcaatgatgaacatgaagtcaga
cagattgaaatagcatccaggaaaccagcgagattggaaaccataatcgcatgtaaagac
ttatttcatcccctacctgaaagaaaccaaccagtcagaacagtgatgacaaagggagtg
gctggcattgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaa
gccaaccaggacatacacttcacatttccattcactttcagagagctgaatgcgctgaaa
gagaaaaagtacagcttggtggaacttgttcatcacttctttactgaaaccaaagaagca
agaatctgcaggtttgaagagttccatgttgtgttcatctttgacggtctggatgagtgt
cgacttcctctggacttccacaacactgagatcctgactgatgttacagagtccacctca
gtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgcctctgg
ataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgaca
gaggtcagagggttcactgacccacagaaggaggagtacttcaagaatagattcagagat
gaggagcaggcctgcaccatcatctcccacatcaagacatcacgaagcctccacatcatg
tgccacatcccagttttctgctggatcactgctacagttctggaggatgtgttgaaaagc
agagagggaggagagctgcccaagaccctgactgagatgtacatccactttctggtggtt
cagtccaaactgaagaacatcaagtatgatggaggagctgagacagatccacactggagt
ccagagagcaggaagatgattgagtctctgggaaaactggcttttgagcagctgctgaaa
ggcaacctgatcttctatgaatcagacctgacagagtgtggcatcgatatcagagcagcc
tcagtgtgctcaggagtgttcacagagatctttaaagaggagagagggctttaccaggac
aaggtgttctgcttcgtccatctgagccttcaggagtttctggcagctcttcatgtccat
ctgacattcatcaactctggagtcaatctgctggcagaaggaccacagtcaacccctcac
aggtctaggccagacaaccctgcagtacaactcttctaccagactgcagtggaaaaggcc
ttaaaaagtcaaaatggacacttggacttgttcctccgctttctcctgggcttgtcagtc
cagaccaatcagactctcctgaaaggcctgctgacaaagacagaaagcggctcacagacc
aatcaggaaacaatccagtatatcaaggaaaacatcgggcagaatgtgtctgcagagaga
agcatcaatctgttccactgtctgaatgaactgaatgatcgttctctagtggaggagatc
caacagtacttgagttcaggaagtctctccacagatgaactctctcctactcagtggtca
gctctggtcttcatcttactgtcagcaggagaaaagctggatgtatttgacctcaggaaa
tactccgcctcagaggaggctcttctatggctgctgccagtggtcaaagcatccagtaaa
tctctgctgggtggctgtaacctatcatcgagaagctgtaaagctctggcctccattctc
agcagccagtcctctagtctgagagacctggatctgagttactgtgacctagaggactca
ggtnngatggcacggtctttggacctggagaatccagactgcaaacttgaagctctcagg
ttaaatggctgtaagctgtcatggaagagctgtcagtccctgttgtcagtgatctgctct
cagtcctcttgtctgagagagctggacctgagtaacaacaacctgcaggattcaggactg
aagcggttctctgcaaactttactctggaaatcctcagattgaatggctgcaacttgtca
agtaacagctgtgaacatctggcttcagttctcagcagtgagccctctggtttgagagag
ctggatctgagtaacaacgacctgcaggatgtaggagtgaagctgctctctgatggaata
gagagtccacactgcaaactggaagctctcagcttgtcaggctgtctgatcacagaggaa
ggctgtgagtctctggcttcagcactgaggtccaacccttcccatctgagagagctggac
ctgagctacaatcatccaggagactcaggagtgaacattctgtctgctggactagacgat
ccacactggagactggacactctcaggttggaaaattgtggagtccagcagttgaaacca
ggactcaggaagtatgcctgcgaactcacaatggacccaaacacagcacacagaaacctg
ttcctacttgagaacaacattgtggtagagaaggaagaggaagaggagcagtcatatcct
catcaccctgaaaggtttcacttctggtaccagctgctgtgtagaaatggtgtgactggc
cgtcggtactgggaggtcctgtggaacggactggtatctataggagtgacttacagagga
atcaagaggagtggacacggtgatgacagcaggattggagggaacaacaggtcctggtgt
ctggactgctctgctgttagttactttgcctggcacaataataaagtgaaaatcatacac
aggcccgtcccgtccagtgcacgcaacagagtaggtgtgtatgtggactggtctgctggt
actgtgtccttctacagagtctcctctgacacactgatccacatccacaccttccactgc
accttcactgaacccctctaccctgcttttaggattcggtctgagtttacatatggactc
tgcaactcactgtctctgtgctga
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integrated database retrieval system
