Scomber japonicus (chub mackerel): 128381243
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Entry
128381243 CDS
T09718
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sjo01002
]
128381243 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128381243 (usp42)
Enzymes [BR:
sjo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
128381243 (usp42)
Peptidases and inhibitors [BR:
sjo01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
128381243 (usp42)
Ubiquitin system [BR:
sjo04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
128381243 (usp42)
BRITE hierarchy
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
128381243
NCBI-ProteinID:
XP_053197174
LinkDB
All DBs
Position
20:complement(18632611..18643352)
Genome browser
AA seq
1219 aa
AA seq
DB search
MTIVDRSSEKSDHESVGCKRSPFTSGDVGMDGSCSSSWAMGPTLPSDSPRLKAPGGCLGP
TPGAAVYNTTPSSVDRPKEQVISGGDGIDMPQKVLFPPERLNLKWTQVHRIGAGLQNMGN
TCFLNSALQCLTYTPPFANYMLTREHSKTCHEPGFCMMCTMQNHIIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGTKLDRQTQATTFIHQVFGGYLR
SRVKCLNCKAVSDTFDPFLDITLEIKTAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSSNVLTLSLKRFANFSGGKITKDVKYPEYLDLRAFMSQSQGEPQVYGLYAV
LVHSGFSCHAGHYFCYIKASNGQWYQMNDSSVSVSDIRSVLNQQAYVLFYIKSSDVKKTG
DYSHTSHNPAIPGQSSPRPVVIPRINTTVHHNIGFIGPQLPPHMTKSALHVNGNGSLRDY
PTSSKPSTSNSVVGKPNHGLGSSSSISHSISRPTVIPDHDKRQKLSFFIGQGKQNRPSSS
SSYSQPSSASSSSSSCSSSSSSSSSSSLSSSSQSTSDVRFVPRQLNHVNGSASCSNGNHH
PGGNGALLVPYSQESSEDSDQENCGTLDNGCLAKSHLNGNNRAGDVFDKGPQATNGESGA
HHNGNGLNGPTNGVSKSNQNGHHNGHHKVNGHNTPDKISGNNHGSLTSAATAAVNGLDSN
HTQASKEIHTCATAQANSAQSIQPAASESQHLSTPDTRAKTVSDPAPQHTAPSAVSSPPT
ATTTDTLPVASREPASSSAHHGNPAALSNPSDGSTRICAAAPQKDNISGDEAKDPPQTNS
PSAGTEGRTDAKEQHQSNPSSRGSERQSSRERERDRLYSSDWSKERDRHYRDRSQERDND
GDRYRYRREYRDYNHHRSYRDRLPTHDRSYKDWEPERRWERTVHHPRERDRDRCSNHYHH
HHQQRYRDDRNRERRGYGYPYREESHSRSRWQQDSRDSRTTKDKSNGRERDYHSAKEETS
SPSTMPETSTKSKGSPPGAPLSTSGSASNREDQNHKRTSVPLSKDRDDSSEARHAKKHKK
SKKKKKSKDKDRHRESGSSDVDSDRATEAKKKKKKKKRQHSPSTAQSHKARSSEERESRK
RRYYDTKNSKHDDACSPEKRRRTDYTDSNGDHLISSQHTSPTENGSNHRHLNGYTGNGYS
RTNGNSHGFSTGLSSTMKH
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagaaaagtctgaccacgagtcagtcgggtgtaagcga
tcccccttcaccagtggagacgtggggatggatggcagctgttccagcagctgggcgatg
ggccccaccctgcccagtgactccccgcgtctaaaggctccaggaggctgcctgggcccg
acgcctggagctgccgtctacaacactacaccctcctctgtggaccggcccaaagagcaa
gtgataagcggcggtgacggcattgacatgccccagaaggtcctcttccctcccgagcgg
ctcaaccttaagtggacccaggttcatcgcatcggtgcgggcctgcagaacatggggaac
acctgcttccttaactcagccctgcagtgtctcacctacacgcctccatttgccaactac
atgttgacaagggagcactctaaaacatgtcacgagccggggttctgtatgatgtgcacc
atgcaaaaccacatcattcaggttttcgccaactctgggaatgtcattaagcccatcggt
gtgctcaatgagctcaaaaggattgcaaagcacttccgctatggaagccaggaggatgcc
catgagttcctgcggtacacagtggatgctatgcaaaagtcctgcttacctggaaccaaa
ttggacaggcaaacgcaggcaaccactttcatccatcaagtatttggcgggtacctaaga
tccagagttaaatgtttaaactgcaaagcagtctctgatacatttgacccttttctggat
attactctggaaattaagacggctcccagtgtctccaaggctctggagcagtttgtcaag
cccgaacagctggacggagaaaacgcctacaaatgcaccaagtgcaaaaaaatggtgacg
gcctcaaagagatttaccatccaccgcagctccaatgtgctcaccctctcactcaaacgc
tttgcaaacttcagcggaggcaaaatcacaaaggatgtgaaataccctgagtacctggat
ctgcgggccttcatgtctcagtcccaaggagagccccaggtttacgggctgtatgctgtg
ctggtccactctggattcagctgtcatgctggacactatttctgctatattaaggcaagc
aacggtcagtggtatcagatgaacgactcgtctgtatcagtcagtgacatcaggtctgtt
ctcaaccagcaggcctatgtccttttctacattaaatccagcgatgtgaaaaagacaggg
gactacagccacacgagccataacccagccatccctggtcagtcgtctccacggccggtg
gtgataccacgcatcaacaccacagtacaccacaacattggcttcattgggccccagctg
cccccacacatgaccaagagtgctctccacgttaacgggaatggatctctgagggactat
cccaccagttccaagcccagcactagcaacagtgttgtgggtaaaccaaaccacggtctg
ggctcctcctcttccatctcccactcaatcagccggcccacagtgatcccagaccacgac
aaacgccagaagctctcattcttcatcggacaaggcaaacagaaccgcccgtcctcctcg
tcctcttacagccagccgtcctctgccagtagctcctcctccagctgctcctcatcctca
tcctcctcatcctctagctctttatcctcctcctcacagtctacctcagacgttcgcttt
gttccgcgtcagcttaaccacgttaacggcagcgcgtcttgcagtaacgggaatcaccac
cctggagggaatggagctcttttggtgccgtacagccaagagtcttcggaggactcggac
caggagaactgtggcactctggataacggctgtttagccaagtctcacctcaacggaaac
aaccgagcaggagacgtgtttgataaaggccctcaagccaccaacggggagtcaggagcg
caccataatggaaacggattaaacggaccaaccaatggcgtctctaaatccaaccagaac
gggcatcataatggacatcacaaagtcaatggacacaatacgcctgataaaatctctggt
aataatcatggcagtttgacctctgcggctactgctgctgttaacggactagacagcaac
catactcaagcaagcaaagagattcatacttgtgccacagcccaggccaactctgctcag
agcatccagcctgctgccagtgaaagccagcacctctccactcctgacacaagggctaaa
actgtgtccgatcccgcgcctcagcatacagcaccctctgctgtcagctctccgcctaca
gccaccactaccgacacccttcccgtcgcatctagagaacccgcttcctcttcggcgcat
cacggcaaccccgcggccttatccaacccgtcggacggctccaccaggatctgtgcagca
gctccacagaaggataacatcagtggggatgaagcaaaggatccaccacagaccaatagt
ccatcagcggggactgaaggacgtacagatgctaaagagcagcatcagtccaatcccagt
tctagaggcagtgaaagacaatcttctcgagaaagggagagagacagactgtactcctct
gactggagcaaagagcgggacagacactacagggacaggagtcaggagcgagacaatgac
ggcgatcgttaccggtacagacgagagtaccgagactacaaccatcatcgttcatacagg
gatcgtttgcccactcacgaccgctcctacaaggactgggagcccgagcgtcgctgggag
aggaccgttcaccacccgagggagcgcgatcgagacaggtgctctaaccattaccaccac
caccaccaacaacgatacagagacgaccggaaccgtgagcggagggggtacggctacccc
taccgcgaggagtctcacagtcgctctaggtggcagcaggacagtcgagactctcggacg
acgaaggacaagagcaacggcagggagagggactatcactctgcaaaagaagagacttcc
tcgccctccactatgccagaaacatccaccaagtccaagggttcacccccgggggcacct
ctctccacatctggatccgcttcaaacagagaggatcaaaatcacaagaggacttctgtt
cctctgagcaaagaccgagacgacagctcggaggcccgacacgctaaaaaacataaaaag
agcaagaaaaagaagaagtcgaaggataaggacagacaccgtgagagcggaagctctgat
gtggattcagacagagccaccgaagcaaaaaagaagaagaagaaaaagaagaggcagcac
agcccgagcacagcccagagccacaaggccagaagcagcgaggaaagggagagccgcaag
cgacgatactacgacacaaagaactctaaacacgacgacgcttgttccccagaaaaacgc
cgacgcacagactacaccgacagcaacggcgatcacctcatctcctcccagcacacctca
cccacggagaacggttcaaatcaccgccacctcaacggctacacaggaaacggttatagc
cgaaccaatggcaactcccacgggttctccactggcctgagcagtaccatgaaacactga
DBGET
integrated database retrieval system
