Scomber japonicus (chub mackerel): 128381611
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Entry
128381611 CDS
T09718
Symbol
vti1a
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1A isoform X1
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
128381611 (vti1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128381611 (vti1a)
Membrane trafficking [BR:
sjo04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
128381611 (vti1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Mer2
Sec8_N
Sec20
LMBR1
Laminin_II
DUF1664
CAP59_mtransfer
Motif
Other DBs
NCBI-GeneID:
128381611
NCBI-ProteinID:
XP_053197632
LinkDB
All DBs
Position
20:12932549..13049934
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AA seq
217 aa
AA seq
DB search
MSSDFEAYEQDFGTITAEITNKIGKIPKLSGEEKTQLVLNVDKQLEEVRELMEQMDLEVR
EIPIQSRAMYNSRLKSYKQEMEKLEKDFKRSRIAYSDEVRNELLGDDASSSENQRAHLLD
NTEKLERSSRRLEAGYQIAVETEQVGQEILSNLHSDREKIQRARERLRETDANLGKSSRI
LTGMLRRIIQNRILVFILGAIILLTIILAIYFNLRGH
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagactttgaagcgtacgagcaggactttgggaccattacggcagagataaca
aacaaaattggaaagattcccaaactaagtggagaggagaagacacagctggttctaaat
gtcgacaaacagcttgaagaagtcagagagttgatggagcagatggacctggaggtgcgg
gagatccccatccagagcagagccatgtacaacagcagactgaagagctacaagcaggag
atggagaagcttgagaaagactttaaaaggtcacgtattgcctacagtgatgaggtgcgc
aacgagctcctgggggatgacgccagctcctcggagaaccagagagcgcatctgttggac
aacacagagaagctggaaaggtcatcacggagactggaggccggctaccagatagcagta
gaaactgaacaagtgggacaagagattctttccaacctgcacagtgaccgtgagaagatc
cagagagccagagaaaggctgagagaaacagatgccaatctggggaagagttctcgaatc
cttaccggcatgctgagaaggatcatccagaatcgtatcctggtcttcatcctcggagcc
atcatccttctcaccatcatcctggccatctatttcaatctgcggggccactga
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