Scomber japonicus (chub mackerel): 128381798
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Entry
128381798 CDS
T09718
Name
(RefSeq) scavenger receptor cysteine-rich type 1 protein M130-like
KO
K06545
CD163 antigen
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sjo04090
]
128381798
CD molecules [BR:
sjo04090
]
Proteins
128381798
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRCR
SRCR_2
Ig_2
Ig_3
ig
APD1-4_N
Orf78
PTS_EIIA_1
Motif
Other DBs
NCBI-GeneID:
128381798
NCBI-ProteinID:
XP_053197808
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All DBs
Position
20:996400..1148484
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AA seq
1148 aa
AA seq
DB search
MDHLLMVLLLLCSSELQAEDDHQPEPFRLVGGASRCAGTLEVKYGEWRPVSDSDWTLKNA
YVICRYLDCGSAVSTRSRDEDSGRSVWWINSDCVQSGSALRDCVSSSDYSSDILEITCSD
SVRLVDGTRLCSGRLEVKSEQSWSSVCEADFDQQDAEVVCRELDCGAPSVLQGALYGEVE
APMWTKEFQCGGNESALLDCRRSDSARRTCSPGKAVGLTCSEPVRLVGGASRCAGTMEVK
QGEWRPVSDYDWTLKEADVICRYLDCGSAVSTRSRNEDSRRSVWRIRSECFQSGSALRDC
VSSDSSYFILEITCSNSVRLVNGTSLCSGRLEVKSEQSWSSVCEADFDQQDAEVVCRELG
CGAPSVLQGALYGEVEAPMWTKEFQCGGNESALLDCRRSDSARRTCSPGKAVGLTCSEPV
RLVGGASRCAGTLEVKQGEKRPVSNSDWTLKEADVICRYLDCGSAVSTRSRNEDSGRSVW
EIRPYCLQSGSDLRDCVSSDSSSSIMEITCSDSVRLVNGTSLCSGRLEVKSEQSWSSVCE
ADFDQQDAEVVCRELGCGAPSVLQGALYGEVEAPMWTKEFQCGGNESALLDCRRSDSARR
TCSPGKAVGLTCSESQPVRLVGGASRCAGTLEVKQGEWRPVSQSDWTLKEAAITCRYLDC
GSAVSTRSRNEDSYRSVWWTSFNCLQSGSALRDCVSSHYTSSIVELTCSDSVRLVNGTSL
CSGRLEVKSEQSWSSVCEADFDQQDAEVVCRELDCGAPSVLQGALYGEVEAPMWTKEFQC
GGHESALLDCRRSDSARRTCSPGKAVGLTCSEPVRLVGGASRCAGTLEVKHGEWRPASYS
IWNLKEADVICRYLDCGSAVSTRSRYEDSNRSVWRIRSDCLQSGSELRDCVSSSSSGYSS
SILELTCSDLLLQPIISVYSTMDGVSGAQQQGFQLLRGSNFTISCSVQPQYPGGSFQLTF
TSSNTAYNYTQPAVNHSADFLFPAADPAHQGNYSCVYGVYVFSHNFSSESRLLSLTVTGP
KVFIITLVVFLLVALLLGVIIIYFILKASRGQKSDPPENTKLGYYKLVVSSAEGEPAEEE
GAQGAEILIPVTYDRVNVHVQEFGKEFESVDGIKGGTEVYEQDVQVFDDARHCRVWCASV
TAADQVAY
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggatcacctgctgatggtgttgctgttgctgtgcagctcagaactccaggctgaagat
gatcaccaaccagagcctttcaggttggtgggaggagccagtcgctgtgcaggtacattg
gaggtgaaatatggagagtggagaccagtgagtgactctgactggaccctgaagaatgca
tatgtaatatgtagatatttggactgtggctctgctgtttcaacaagaagcagagatgaa
gactcaggcagatctgtatggtggatcaactctgactgtgttcagtctggatctgcactg
agggactgtgtatcatcatcagattactcttccgacatcctggagatcacctgctcagac
tctgtcaggctggtggatgggactagactgtgttcaggcagactggaggtgaagtctgag
cagtcgtggtcctcagtgtgtgaagctgactttgaccagcaggatgcagaggtggtctgt
agggagcttgactgtggggctccttcagtcctccagggggcgctctatggagaagtggag
gctccaatgtggaccaaagagttccagtgtggaggcaatgagtctgctctcctggactgt
agaagatcagactcagctagaagaacctgctcacctggtaaagctgttggactcacctgc
tcagagcctgtcaggttggtgggaggagccagtcgctgtgcaggtacaatggaggtgaaa
cagggagagtggagaccagtgagtgactatgactggaccctgaaggaagcagatgtaata
tgtagatatttggactgtggctctgctgtttcaacaagaagcagaaatgaagactcacgc
agatctgtatggaggatcagatctgagtgttttcagtctggatctgcactgagggactgt
gtatcatcagattcctcttacttcatcctggagatcacctgctcaaactctgtcaggctg
gtgaatgggactagtctgtgttcaggcagactggaggtgaagtctgagcagtcgtggtcc
tcagtgtgtgaagctgactttgaccagcaggatgcagaggtggtctgtagggagcttggc
tgtggggctccttcagtcctccagggggcgctctatggagaagtggaggctccaatgtgg
accaaagagttccagtgtggaggcaatgagtctgctctcctggactgtagaagatcagac
tcagctagaagaacctgctcacctggtaaagctgttggactcacctgctcagagcctgtc
aggttggtgggaggagccagtcgctgtgcaggtacactggaggtgaaacagggagagaag
agaccagtgagtaactctgactggaccctgaaggaagcagatgtaatatgtagatatttg
gactgtggctctgctgtttcaacaagaagcagaaatgaagattcaggcagatctgtatgg
gagatcagaccttactgtcttcagtctggatctgatctgagggactgtgtatcatcagat
tcctcttcctccatcatggagatcacctgctcagactctgtcaggctggtgaatgggact
agtctgtgttcaggcagactggaggtgaagtctgagcagtcgtggtcctcagtgtgtgaa
gctgactttgaccagcaggatgcagaggtggtctgtagggagcttggctgtggggctcct
tcagtcctccagggggcgctctatggagaagtggaggctccaatgtggaccaaagagttc
cagtgtggaggcaatgagtctgctctcctggactgtagaagatcagactcagctagaaga
acctgctcacctggtaaagctgtgggactcacctgctcagagtcacaacctgtcaggttg
gtgggaggagccagtcgctgtgcaggtacactggaggtgaaacaaggagagtggagacca
gtgagtcagtctgactggaccctgaaggaagcagctataacatgtagatatttggactgt
ggctctgctgtttcaacaagaagcagaaatgaagactcatacagatctgtatggtggacc
agctttaactgtcttcagtctggatctgcactgagggactgtgtatcatcacattacact
tcctccatcgtggagctcacctgctcagactctgtcaggctggtgaatgggactagtctg
tgttcagggagactggaggtgaagtctgagcagtcgtggtcctcagtgtgtgaagctgac
tttgaccagcaggatgcagaggtggtctgtagggagcttgactgtggggctccttcagtc
ctccagggggcgctttatggagaagtggaggctccaatgtggaccaaagagttccagtgt
ggaggccatgagtctgctctcctggactgtagaagatcagactcagctagaagaacctgc
tcacctggtaaagctgttggactcacctgctcagagcctgtcaggttggtgggaggagcc
agtcgctgtgcaggtacactggaggtgaaacatggagagtggagaccagcgagttattct
atctggaacctgaaggaagcagatgtaatctgtagatatttggactgtggctctgctgtt
tcaacaagaagcagatatgaagactcaaacagatctgtatggaggatcagatctgactgt
cttcagtctggatctgagctgagggactgtgtatcatcatcatcatcaggttactcttcc
tccatcctggagctcacctgctcagacctgctgcttcagccaatcatctctgtgtattct
accatggacggggtctccggggcccagcagcaggggtttcagttgctccggggctccaac
ttcaccatcagctgctccgtccagcctcagtacccaggaggctccttccagctcaccttc
acctcctccaacacagcatacaactacacccagccagctgtcaatcactctgctgacttc
ctgtttcctgctgcagaccccgcccaccaaggaaactacagctgtgtttatggcgtctat
gttttttctcataacttctcctctgagagccgtctgctctctctcactgtcacaggtcca
aaagtttttatcatcacactggtcgtcttcctgctggtggctctgctgttgggtgtcatt
atcatctatttcatcctgaaggccagcagggggcagaagtcagacccaccggagaacact
aagctgggttattataaacttgtagtttccagtgctgaaggagagccggctgaagaggaa
ggagctcagggagcagagattctgattccagtgacatatgatcgggtcaatgttcatgtc
caagagtttggtaaagagtttgagagtgttgatggaatcaaaggcggaactgaagtctat
gaacaggatgtgcaggtgtttgatgatgccaggcattgcagggtgtggtgtgcttcggtt
actgctgctgaccaggtggcttattaa
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