Scomber japonicus (chub mackerel): 128382052
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Entry
128382052 CDS
T09718
Symbol
drosha
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128382052 (drosha)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128382052 (drosha)
03009 Ribosome biogenesis [BR:
sjo03009
]
128382052 (drosha)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128382052 (drosha)
Enzymes [BR:
sjo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
128382052 (drosha)
Messenger RNA biogenesis [BR:
sjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
128382052 (drosha)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
90S particles
RNase
128382052 (drosha)
Prokaryotic type
rRNA processing factors
128382052 (drosha)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
128382052 (drosha)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
Motif
Other DBs
NCBI-GeneID:
128382052
NCBI-ProteinID:
XP_053198005
LinkDB
All DBs
Position
21:complement(9526933..9621304)
Genome browser
AA seq
1354 aa
AA seq
DB search
MSFHQDRGGPRGGVPPGQHSSPQNYRPTNLRPPPPQPPVPPYHYDPQNPPSSGYHGNSGY
MPPHSDFMQYPPPPPSQTPSSLNACPVRPPFPKPPVRQGFPEPPPNFPPPPLPCSAGGPT
AGSQVSAQNAYHPYMMPSVPPPPLPHPPMPPPMASQSMNYHPPYSMNYPHPPHPPFPPPT
FSPGYTQSPNSFKPDHSFRHGGQYKYEKPMDNRRSPERGYRHDDHRQKSYAYGSDRHKME
FPGDRKDRGRSPDRRSRPEATGGRYRSEYDRGRTSPRHRSRDRSRERYRHRESRRSQSPD
RHRKRPRSRSTSRDRKRSRWEEERDRRSESSSGPNRERSYSSVRSRDSEETFADRDRDRE
REREREREPEREKEKGDDEKEEEELLKPAWIRCTHAENYYSNDPMDQVGDSTVVGTSKLR
DLYERFDEELGKRQERAKEVRPKWDPPKTKLDEDPDDSSSDSDCESDGEGSTCSSSSDSE
VFDVIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEEPVKQ
CRVMNNNTGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSLFSHTPLTSIPLCRV
IRFNIDYTIHFIEEMAPENYCVRGLELFASYLFQDILELYDWNLTGPDFDNDVSGCQRFH
FMPRFVRFLPDGGKEVLSMHQVLLYLLRSSKPLVPEEEIADMLQWEELEWQKYAEECKGM
IVTNPGMKPSSVRIDQLDREQFNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKL
RHLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHA
MMLPVLTHHIRYHQCLMHLDKLIGYVFTERCLLQLAMTHPSHHLNFGMNPDHARNSLSNC
GIRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLT
SVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAM
ANCFEALIGAVYLEGGLDEARQLFGRLLFNGEDLREVWLNYPSHPLQVQEPHTDRQLIET
SPVLQKLTSFEGSIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE
YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADL
LESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD
IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQ
KRFIERKYRQELKEMRRERERQEKETDEAEECRK
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccatcaggatcgtgggggtcccagaggaggggtaccacctggccagcacagc
tcaccacagaactaccgacccaccaacttgaggcctccccctccccagccccccgtacct
ccataccactacgatcctcaaaatcctcccagttcaggctaccatggaaacagcggctac
atgcctccgcactctgacttcatgcagtatccgcctccaccaccttcccagactcccagt
tctctgaacgcgtgcccagtccgcccgcctttccccaagccacctgtccgacagggcttt
cctgaacccccacccaactttccacctccacccttgccctgctctgcagggggtcctaca
gcaggctcccaggtgtctgctcagaatgcctaccacccttacatgatgccttccgtgccc
ccaccaccactaccacacccacccatgcctcctcccatggcttctcaatctatgaactac
caccctccatactcaatgaactaccctcaccccccccaccctcccttccctcctccgacc
ttcagccctggttacacccaaagccccaactcattcaaaccagaccacagcttcaggcat
gggggacagtacaagtatgagaaacccatggacaaccggaggtctccagaaaggggatat
cgccatgatgaccacaggcagaagagctatgcctacggtagtgataggcataaaatggaa
tttcctggggacaggaaggaccgcgggaggagtccagacaggcgtagcaggccagaggcc
acaggtggacgttacaggtccgagtatgatagaggccggacttctcccagacacaggagc
agggatcgcagcagagagaggtatcgtcacagagaaagtcggagatcccagtcgcctgac
aggcacagaaagaggcctcgcagccggtcaacaagcagagacaggaagcgcagtcgctgg
gaagaggagagggaccggaggtcagagagctcctcaggcccgaacagagagcgcagctac
tcatccgtcaggagcagagactctgaagagaccttcgctgacagagaccgagaccgagag
agggaacgggagagagagagagagccggagagggagaaagagaaaggcgatgatgagaaa
gaagaagaggaactactgaaacctgcctggatccgctgcacgcatgctgagaactactac
tccaacgatcccatggaccaagtgggagactccacagtggtggggaccagtaaactccgg
gacctgtacgagcgatttgacgaggagctggggaagagacaggagcgagcaaaggaagtc
cgacctaaatgggacccacccaagaccaaactggatgaggatccagatgacagcagtagt
gactcagactgtgagtcagatggtgaaggaagtacctgctccagcagctctgactctgag
gtttttgatgtcattgccgagatcaagagaaaaaaagctcaccccgaccgcctacatgag
gagctgtggtacaatgaccccggacagatgaatgatggtcccttgtgtaagtgcagtgcc
aaggccagacgtacagggatccgccacagcatctacccgggggaggagcctgtgaaacag
tgtcgtgtaatgaacaacaatacaggaaaactcttccactacaggatcactgtgtctcct
cccaccaacttcctgactgacaggccgacagtgatcgagtatgatgaccacgagtacctg
tttgaaggcttttctcttttctcccacactcctctcaccagtattccattgtgccgtgtg
atccgcttcaacatagattacaccattcacttcatagaggagatggcaccggagaactac
tgtgtccgaggcctggagttgttcgcctcctacttgttccaggacattcttgagctgtat
gactggaacttgacaggccctgactttgacaacgatgtttctggatgccagcggttccat
ttcatgccccgttttgtccgattcttacctgatggtgggaaggaggtgctgtctatgcat
caggtgcttctctacctgctgcgtagcagcaagcccctggtccctgaggaggagattgca
gacatgctgcagtgggaggagctggagtggcagaaatatgcggaggagtgcaagggcatg
atcgtcaccaacccaggcatgaaacccagctcggtgcgaatcgaccaactggacagagaa
cagttcaacccagaagtcatcaccttccccataattgttcattttgggatccggcccgct
caactcagctacgctggagaccctcagtaccagaagctgtggaagagctatgtcaaacta
cgccacctgctggccaacagccccaaggtcaagcagattgacaagcagaagttgacacag
agagaggaagctcttcagaagatccgtcagaagaacactatgcgccgtgaggtgacagtg
gagctcagcagccagggtttctggaagactggcatccgctccgacgtctgtcagcacgcc
atgatgctgcctgttcttacccatcatatccggtaccaccagtgtctgatgcacctggat
aagctcattggttatgtcttcacagagcgttgcctccttcagctggccatgacacacccc
agtcaccacctcaacttcgggatgaatcctgatcacgcccgcaactccctttccaactgt
ggcatccgtcagccgaagtatggagacaggaaggtccaccacatgtacatgaggaagaaa
ggaatcaacacattgattaacatcatgtctcgtctgggccaggatgacccctccccttcc
aggatcaatcacaacgagagactggagttcctgggtgatgctgttgtcgagttcctcacc
agtgtccacttgtactacctttttcccagtttagaggaaggcggcttggccacttacaga
acagccatcgtacagaaccagcacttagccatgctagccaagaaactggagttagatcgc
ttcatgctctacgctcacggaccagatctgtgtcgggagtcagacctgcgacacgccatg
gccaactgctttgaggctcttattggtgctgtgtatttggagggaggcttggatgaggcc
cggcagctctttggtcgactgcttttcaacggcgaggacctacgggaggtctggctcaac
tacccatcacaccccctgcaggtccaggagcctcatacagacaggcagctgatagagacg
tccccagtcctgcagaaactgaccagcttcgagggctctattggcgttctgttcactcat
gtgcgtttgctggccagagccttcacgctgaggaccgtgggcttcaaccaccttaccctt
ggccataaccaaaggatggagttcctgggagattctatcatgcagctggtggccacagag
taccttttcatccacttccctgatcaccatgaaggacatttaacactgctccggagttcg
ctggtgaacaaccgcacgcaggccaaagtggctgaggagttgggcatgcaggagttcgcc
atcaccaacgacaaaaccaaacgaccagtcgcacttcggaccaagactctggctgactta
ttggagtctttcatcgcagccctctacattgataaagatctggagtttgtgcataccttc
atgaacgtctgcttcttcccccggctgaaggagttcattctgaatcaggactggaatgac
ccgaagtctcagctgcagcagtgctgtttgaccctgagaacagagggcaaggagcctgat
atcccgctgtacaagaccctgcagacagtggggccctcacatgcccgcacctacactgtc
gctgtgtatttcaaaggggagcgaatcggctgtggcaaaggcccaagcatccaacaggca
gaaatgggagctgcgatggatgcgcttgaaaaatataacttcccacagatggctcatcag
aagcgcttcatcgagcggaaatacagacaggagctgaaggagatgagacgagagcgggag
cggcaggagaaggagaccgacgaggcggaggaatgcaggaagtga
DBGET
integrated database retrieval system
