Scomber japonicus (chub mackerel): 128382097
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Entry
128382097 CDS
T09718
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128382097
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128382097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FISNA
NLRC4_HD2
NACHT
NOD2_WH
PRY
LRR_6
SPRY
DUF4329
DFF-C
LRR_4
Motif
Other DBs
NCBI-GeneID:
128382097
NCBI-ProteinID:
XP_053198058
LinkDB
All DBs
Position
21:938622..951516
Genome browser
AA seq
1057 aa
AA seq
DB search
MNSDWSMELPNTFKDGRHSDDHRVDQESSEVPSGQSAQQHQTHLDSIFMLLEENIVTFVK
NELKKMRKVLSPDYPECLESQSEDEEVLDGEEKEQRRRSRDAFLKITVHFLRRMKQEELA
ERLQSRTPAGRCQHKLKSNLEKKFQCLFEGIAKAGNPTLLNQIYTPLYITEGGTAEVNDE
HEVRQIETASRKPVRPETTIRQEDIFNASPGRDEPIRTVMTKGVAGIGKTVLTQKFTLDW
AEDKANQDIHFTFPFTFRELNVLKEKKYSLVELVHHFFTETKEAGICRFEEFQVVFIFDG
LDECRLPLDFHNNKNLTDVTESTSVDVLLTNLIRGKLLPSARLWITTRPAAANQIPPWCV
DMVTEVRGFTDPQKKEYFGKRFRDEEQASTIISHIKTSRSLHIMCHIPVFCWITATVLED
VLKSREGGELPKTLTEMYIHFLVIQSKLKNIKYDGGAETDPHWSPESRKMIESLGKLAFE
QLQKGNLIFYESDLTECGFDIRTASVCSGVFTQVFKEERGLYQDKVFCFVHLSVQEFLAA
LHVHLTFIKSGVNLLAQQQTTSQKSETKQESAETRFYQSAVDEALKSPNGHLDLFLRFLL
GLSLQTNQTLLRGLMTQTGSISKTSQETVEYIKKKLSENVSAERSINLFHCLNELNDRSL
VEEIQQSLRSGSLSTDKLSPAQWSALVFILLSSEKDLDVFDLKKYSASEEALLRLLPVVK
TSKTVLLSGCNLSERSCAALSSVLSSQSSSLRDLDLSNNNLQDSGVKQLSAGLESPHCGL
ETFRLNGCNLSERSCEALSSVLSSQSSSLRDLDLSNNNLQDSGVKQLSAGLESPHCGLET
LSLQPAGVRWLTPGLRKYACELELDPNTMHRNIKLSDNNRKVTHVKEVQSYPDHPDRFDV
WSQLLCRNDLTGRCYWEVEWRGRVDISVSYRRISRKGRSNACVFGYRNQSWSLECSDGRY
SVRHNKRETRISSSSSSSSSSSSSSSSSSSSSSSSSSSASNRVAVYVDCPAGTLSFYRVS
SDTLIHLHTFNTTFTGPLCAGFGFWSFYGSSVSLCGL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtgattggtctatggagcttcctaataccttcaaagatggacgccactctgat
gatcacagagtggaccaggagagctcagaggttcccagtggtcagtctgcccagcagcat
caaacacacctggactccatatttatgctgctggaggagaacatcgtcacttttgtgaag
aacgagctgaagaagatgcggaaggttctgagtccagattacccagaatgcttagagagt
cagagtgaggatgaggaagtgttggacggtgaggagaaagagcagaggaggagaagcaga
gacgcatttctgaagatcacagtgcacttcctgaggagaatgaagcaggaggagctggct
gagcgtctgcagagcagaactcctgctgggaggtgtcaacataaactcaagtctaacctg
gagaagaagttccagtgtctgtttgaggggatcgctaaagcaggaaacccaacccttctg
aatcagatctacacaccgctctacatcacagagggagggactgcagaggtaaatgatgaa
catgaggtcagacagattgaaacagcatccaggaaaccagtcagaccagaaacaacaatc
agacaagaagacatctttaatgcctcacctggaagagatgaaccaatcagaacagtgatg
acaaagggagtggctggcattgggaaaacagtcttaacacagaagttcactctggactgg
gctgaagacaaagccaaccaggacatacacttcacatttccattcactttcagagagctg
aatgtgctgaaagagaaaaagtacagcttggtggaacttgttcatcacttctttactgaa
accaaagaagcaggaatctgcaggtttgaagagttccaggttgtattcatctttgacggt
ctggatgagtgtcggcttcctctggacttccacaacaataagaacctgactgatgttaca
gagtccacctcagtggatgtgctgctgacaaacctcatcaggggtaaactgcttccctct
gctcgcctctggataaccacacgacctgcagcagccaatcagatccctccttggtgtgtt
gacatggtgacagaggtcagagggttcactgacccacagaagaaagagtacttcgggaag
agattcagagatgaggagcaggccagcaccatcatctcccacatcaagacatcacgaagc
ctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggat
gtgttgaaaagcagagagggaggagagctgcccaagaccctgactgagatgtacatccac
ttcctggtgattcagtccaaactgaagaacatcaagtatgatggaggagctgagacagat
ccacactggagtccagagagcaggaagatgattgagtctctgggaaaactggcttttgag
cagctgcagaaaggcaacctgatcttctatgaatcagacctgacagagtgtggcttcgat
atcagaacagcctcagtgtgctcaggagtgttcacacaggtctttaaagaggagagaggg
ctgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgct
cttcatgtccatctgacattcatcaagtctggagtcaatctgctggcacaacaacaaaca
acatcccagaagtctgaaactaaacaagaatctgcagagacacgtttctaccagagtgct
gtggacgaggccttaaagagtccaaatggacacctggacttgttcctccgcttcctcctg
ggtctttcactgcagaccaatcagactctcctacgaggtctgatgacacagacaggaagt
atctcaaagaccagtcaggaaacagttgagtacatcaagaagaagctcagtgagaatgtg
tctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgatcgttctcta
gtggaggagatccaacagtccctgagatcaggaagtctctccacagataaactgtctcct
gctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggacgtgttt
gacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaa
acctccaaaacagttctgctgagtggctgtaacctctcagagagaagctgtgcagctctg
tcctcagttctcagctcccagtcctctagtctgagagatctggacctgagtaacaacaac
ctgcaggattcaggagtgaagcagctttctgctggactggagagtccacactgtggactg
gaaactttcaggttgaatggctgtaacctctcagagagaagctgtgaagctctgtcctca
gttctcagctcccagtcctctagtctgagagatctggacctgagtaacaacaacctgcag
gattcaggagtgaagcagctttctgctggactggagagtccacactgtggactggaaact
ctcagcctgcagcctgctggagtccgatggttgacaccaggtctgaggaagtatgcctgt
gaactggaactggatccaaacacaatgcacagaaacatcaaactgtctgataacaacagg
aaggtgacacatgtgaaggaggttcagtcatatcctgatcatccagacagatttgatgtc
tggtctcagctgctgtgtagaaatgatctgactggtcgctgttactgggaggtcgagtgg
agaggaagagttgatatatcagtgagttacagaagaatcagcaggaaaggacgcagtaat
gcctgtgtgtttggatatagaaatcagtcctggagtctggagtgctctgatggtcgttac
tctgtccgtcacaataagagagaaacacgcatctcctcctcctcctcctcctcctcctcc
tcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctctgcctct
aacagagtagcagtgtatgtggactgtcctgctggcactctgtccttctacagagtctcc
tctgacacactgatccacctccacaccttcaacaccacattcactggacctctgtgtgct
gggtttgggttctggtctttttatggttcctcagtgtctctgtgtggtttgtag
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integrated database retrieval system
