Scomber japonicus (chub mackerel): 128382270
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Entry
128382270 CDS
T09718
Name
(RefSeq) cadherin-20-like
KO
K06807
cadherin 20, type 2
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128382270
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Major cadherins
128382270
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
128382270
NCBI-ProteinID:
XP_053198242
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Position
21:9839964..9863648
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AA seq
796 aa
AA seq
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MGARLHLPGVASTLLAVALGILTLLPHIVLAKPTEEESTGSSPLLQRAKRSWVWNQFFVL
EEYTGLEPLYIGKLHSDMDKGDGSIKYILTGEGAGTTFTIDDSTGDIHAIQRLDREVKAQ
YILRAQARNRLTDRPLEPESQFIVKIQDINDNEPRFLDGPYQASVPEMSKIGTSVIQLTA
TDADDPTYGNSARVVYSILEGQPYFSVDAKTGMVRVSLADMDRETRENYTVVIQAKDMGG
QLGGLAGTTTIKITLSDVNDNPPMFDQRLYQMSIPESASVGSVVGRIWAKDRDIGVNAEM
KYSIIDGDGRDTFDISTDPTNLFGIITVKKPLDFEGKPSYTLKVEGANTNLDPAFRHRGP
FKDVTIVHVSVKDEDEPPLFDSPAYYIELPEDAELGTVVKMVSARDPDAANNTVRYAIER
SSDPEKYFYIDITSGTLMTQHFLDREKIGWHNITVLAMEMNNPEQIASSSVVVKVLDVND
NPPSLTHYLEAYVCENAKAGQLIQTVTALDSDEPLGGQHFYYSLTPEAANNPNFTLRDNQ
DNTAWILTRRGGWSQQDQTVFYLPISISDGEQPVQTSTSTLTIRVCSCDQEGNVMSCNAE
AYSLPASLSRGALIAILACIFVLLVMILLMLSLRTHRKKPYLCDEEENVHENIVRYDDEG
GGEEDTEAFDIAAMWNPREAHHHLGKMRQDMLPEIESLSRYVPQACVMGGGGDSNVHGYV
LAKLLEADMDQCAPPYDSLQTYAYEGEGSIAESLSSLQSGTSNTDHEYDYLNDWGPRFKK
LAEMYGVLETNSPPMW
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgggagcccgattgcaccttccaggagttgctagcaccttactcgctgtggcccttggc
attttgaccctcctgcctcatattgttctggctaagcccacggaggaagaaagcacaggc
agttcaccactgctccagagggcaaagcgaagctgggtgtggaaccagttctttgttcta
gaggagtacactggactggagccactttatattggaaagctccactcagacatggataaa
ggggatggctccattaaatacatcctgacgggtgagggtgcgggcacaaccttcaccatc
gacgacagcactggggacatccacgccattcagaggctggaccgggaggtgaaggcccag
tatatcctccgtgctcaggcccgcaaccgcctgacagacaggcctctggagcccgagtcc
cagttcattgtcaagatccaggacatcaatgacaatgagccaaggtttctggatggaccc
taccaggccagtgtacctgaaatgtctaaaataggaacatctgtgatccagctaaccgct
acagatgccgatgaccccacatatggcaacagtgcccgtgtggtctacagcatcctggag
ggccaaccttacttctcagtggatgccaagaccggcatggttcgcgtctcactggcagac
atggaccgggagaccagagaaaactacactgtggtcatccaggccaaggacatgggtggc
cagctgggggggctcgctggcaccactaccatcaaaatcaccctcagtgatgtcaatgac
aacccgcccatgtttgaccagaggctgtatcagatgagcatcccggagtcagcatctgtg
ggttcagtggtgggtcgtatatgggcgaaggacagggacatcggggtcaacgctgagatg
aagtacagcattattgatggagatggaagggacacctttgacatcagcactgaccctacc
aacctttttggcatcatcacggtgaaaaagccactggactttgagggcaagcccagttac
actctgaaggtggagggcgccaacaccaacctggaccctgcctttcgccaccgcgggccc
ttcaaggacgtcaccatcgtgcatgtgagtgtaaaggacgaggacgagcccccactgttc
gactcgccggcttactacattgagctgccagaggacgctgagcttgggacagtggtgaag
atggtgtcagcgagggatcctgatgctgccaacaatactgtgaggtatgccatcgagagg
tctagtgaccctgagaagtacttctacattgatatcacttccgggacactgatgacgcag
catttcctggacagagagaagattggatggcacaatatcactgtcctggccatggagatg
aataaccccgaacagatcgccagttcatcggtggttgtgaaggtcctggatgtgaatgat
aatcctccctcgctgacgcattacctggaagcttatgtctgtgaaaatgccaaagcagga
cagctgatccagacggtgacagctcttgattcagatgagccgttgggcggacaacacttc
tactacagcttgactccagaagctgccaacaaccccaacttcaccctgagagacaaccaa
gacaacacagcgtggatcctgactcggcgcggaggctggtcgcagcaggaccagaccgtc
ttctatttgcccatctccatctctgacggtgagcagccggtccagaccagcaccagcaca
ctgaccatccgtgtgtgcagctgtgaccaggagggcaacgtcatgtcatgcaatgctgaa
gcctacagtctgcctgccagcctcagcagaggagccctcatcgccatcttggcctgcatc
tttgtcctgctggtgatgattctgctcatgctttccctgcggacccatcgtaagaagccc
tacctgtgtgacgaggaagagaatgtgcacgagaacatcgttcggtacgatgatgaaggt
ggcggcgaggaggacactgaggcctttgacatcgccgccatgtggaacccgcgagaagca
caccaccacctgggcaagatgaggcaagatatgctgccagagatcgaaagtctctcccgc
tacgtccctcaggcctgtgttatgggtggcggcggggatagtaacgttcacggatacgtc
ctggcgaagcttctggaggctgacatggaccagtgcgccccaccttacgactctctgcag
acctatgcctacgaaggggaaggttcaattgcagagtcgctcagctcgctccagtcaggg
acatctaacactgaccacgagtacgactatctcaacgattggggacctcgtttcaaaaaa
cttgccgagatgtacggcgtgctggagacaaacagtcctccaatgtggtag
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