Scomber japonicus (chub mackerel): 128382327
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Entry
128382327 CDS
T09718
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128382327 (trpa1b)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128382327 (trpa1b)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
CBM_4_9_1
Motif
Other DBs
NCBI-GeneID:
128382327
NCBI-ProteinID:
XP_053198303
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All DBs
Position
21:complement(13708862..13726905)
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AA seq
1120 aa
AA seq
DB search
MNFSREVTRQTSCYTYVIEDEDPALASLNVFELSEKGDLALLENLVKKSPEVLNERDECG
ASPLHHAAAGGHVTLIQSITAVIDSKELDSCDEQGNVPLHWAVEKNKAESCRALLDLGAD
PNILNMALLSPLHLAVSQGHNNLVELLLSYSATDCNLPGDLGNTPVMLACSINNCEALST
LIKHGARLCQQNKLGHYAMHAAAFAGAKTAMEVILKAGEELGHSSEGHINYLDKSMSSPL
HLAVRGGNIETIRLCLATGAKVDQQQNDRSTPLHLACTQGATEVVKLMLSSYDQVEDIIN
LTDGACQTPLHRATIFDHMELAEYLISLGADLNSTDCEGNSPLLLATSCGAWKTVALLLS
KGANVNVKDGFGCNFLHLAIQQPKGLKNLPEDALQHSSVKALLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQLGLECKSKDKKSALHFAAQYGRINTCHRLLETITDSRLLNEGDER
GLTPLHLASRGGHTKVVQLLLSKGALFHSDYKGWTCLHHAASEGYTQTMDILLSANLKLL
NKTDEDGNTALHIAARLGHVAAVKLMLARGAELILNKNDTSFLHEALQNGKKDVVNALID
SDRCPEAVNLFKPGSSQRCPILDMIEVLPETYKHLLDRCVKESDDDHNSPDYHIEFDFKW
LQAPLVLKKVKDKTLRPQPLAALNAMVQYNRIELLNHPVCKKYLAMKWIAYGSTAHVLNM
FFYLLGLLPLTHLIVTLRPSMNTTETGEHSIQMVPTYFLKQSLFLSSCMVMVLIINIYSI
AKEVVQISQQRWSYFRDYSNQCDWFSAIFSLLFIIPLMLNAEGSLHWQAGAMAVLNSWVG
FLLYLQRFEGIGIYVVMFGEIMKTLVRIVMLFLYLMLAFSLAFHALMLNQKEFDSVPLAV
MQTFVMMVGELNYQNNFLDAYLKHELPFGLLTYFIFVTFVLLMPILLVNLMIGLAVGDIA
EVQRNAALKRIAMQIDLHTALEDKLPYWFMKRVDKPYITIYPNRKCSRHRINQLFLGEED
KNEVWSHLKAKSQNCPVIENELKKQKSRMKEMSCLLEKQSNLLKLIIQKMEITSEADEYD
GPVNIRRNVWPNLSQAKPRGHNVSRWLPLMKAIDSKKNGR
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggaagtgacccgacagaccagttgttatacatatgtgatagaagat
gaggatccagccctggcaagtctaaatgtatttgagttgtcggagaagggtgacttggct
ttgctggagaacctggtgaagaagagcccagaggtcctgaatgaaagagatgaatgtgga
gccagtccccttcatcatgctgccgcagggggccacgtcaccctcatccaatctatcact
gctgtcatagactcaaaggagctggacagctgtgatgagcagggcaatgtgcccctacac
tgggcagtggagaaaaacaaggctgagagctgtagggctcttttggacctgggagctgac
cccaacatcctcaacatggccctcctgtccccactacatctggctgttagccaaggacac
aacaacctggtggagctcctactgtcctacagtgctacagactgcaatctgccaggagac
cttgggaacaccccagtgatgctggcctgctccatcaataactgtgaggctctcagcaca
ctgataaagcatggagcacgcctttgccaacagaacaagctcggccattacgccatgcac
gcagctgcttttgcaggtgcaaaaacagccatggaagtgatcctgaaggccggagaagag
cttggtcactcaagtgaaggccacatcaactatcttgacaagtccatgagcagtcccctc
catctggctgtacgtggtgggaacatcgagaccattcgcctctgcctagccaccggggca
aaagttgaccaacaacagaatgacagatccacgccgcttcatttggcttgcacccagggc
gctacagaggtagtcaaactgatgctctcatcctatgaccaagtggaagacatcatcaac
ctgactgatggggcgtgtcagacccctctacacagggctacaatatttgaccacatggag
ctggcagagtatctaatatctttgggtgcagacctaaacagcactgattgtgaggggaac
tctcccttactgctggctacgagctgcggagcttggaaaacagtggcactgcttctgtca
aaaggggcgaatgtaaatgtcaaagatggatttggttgtaacttccttcacctggccatt
caacagcccaagggtctgaaaaatctcccagaagatgcactccagcatagttctgtgaag
gcgttgctgagctgtgaggataatgagggctgtaccccactccactatgcttgcagactg
ggtatccatgactcagtgaagaacatgctgggcctctcgggacagctcggcctcgaatgc
aagtccaaggacaagaagtctgccctgcactttgctgctcagtacgggcgcatcaataca
tgtcacagattattggagaccatcacagactctcgtttgctaaatgaaggggatgagcgg
ggtctgacaccacttcatttagcttcgagaggggggcacaccaaggtggtacagctgctg
ctctctaaaggagctctatttcacagtgattacaaaggctggacgtgtctgcaccatgct
gcatctgagggatacacacaaactatggacattctcctgtcagccaatctaaagttgctg
aataaaacagatgaggatgggaacactgcactccacattgcagcaagattggggcatgtg
gctgcagtcaagctcatgctggctcgtggggcagagctcatcttaaacaagaatgacaca
tcattcctccacgaagctctgcaaaatggaaaaaaagatgtagtcaatgctctaattgac
agtgacagatgcccagaggctgtaaacctgttcaaaccaggctctagccaacgatgtcca
atattagacatgattgaggtcctacctgagacctacaagcacttgttggaccgctgtgtg
aaggaatctgacgatgatcataacagtcctgactaccatattgaattcgatttcaaatgg
ctccaagctcccctagtactgaagaaggtgaaggacaagaccttgagacctcagccacta
gctgcactcaatgcaatggtgcagtacaaccgtattgagctcctcaaccacccggtctgc
aaaaagtatctggcaatgaagtggattgcttacgggagcacagctcacgtgctcaacatg
tttttttacctgttaggccttctgcccctaactcacctgatagtgactctgaggccctcc
atgaacaccactgagacaggggagcacagcatccagatggtgcccacatatttcctaaag
caaagtctgtttttgtcctcgtgtatggtgatggtcttgatcataaacatctactcgata
gcaaaggaagtggtgcagatatcacaacagcgctggagttacttcagggattattccaac
cagtgtgactggttttcagccatcttctctcttctgttcatcattcctctcatgctcaat
gcagagggttcattacactggcaagcaggggcaatggcagttttaaactcctgggtggga
tttctcctttatctccagaggtttgaggggattggcatctatgttgtgatgtttggggaa
atcatgaagacactggtccgtattgtaatgctgttcctgtacctgatgttagcgttcagt
ttggcgttccatgctctgatgcttaaccagaaagagtttgacagtgtgccacttgcggtg
atgcaaacctttgtgatgatggtgggagaactgaactaccagaataacttcctggatgct
tatctgaaacatgagcttccctttggtctcctgacatacttcatttttgtgacctttgtt
ctgctcatgccaatactgctggttaaccttatgattggtttagcagttggagatattgct
gaagtacagagaaatgctgccctaaaaagaatagccatgcagattgacctccacaccgcc
ctagaagataaactgccttattggtttatgaaacgagttgacaaaccctacatcaccatt
taccccaatcgcaagtgctccaggcaccgcataaaccaactcttcttaggtgaagaggac
aaaaatgaagtctggagtcatttgaaggccaaatcacagaactgtcctgtgatagagaat
gagctcaaaaagcagaagtccaggatgaaggagatgtcatgtttgctggagaagcagagc
aacctcctgaagctcatcatccagaagatggagatcacctcagaggcagacgagtacgat
ggccctgtgaacatcagacgcaacgtgtggccaaacttgagtcaggctaaaccaagagga
cacaatgtgtcacgctggcttccactgatgaaggccattgattccaaaaaaaatggaaga
taa
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