Scomber japonicus (chub mackerel): 128382566
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Entry
128382566 CDS
T09718
Name
(RefSeq) basic helix-loop-helix domain-containing protein USF3 isoform X1
Organism
sjo
Scomber japonicus (chub mackerel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
128382566
NCBI-ProteinID:
XP_053198534
LinkDB
All DBs
Position
21:12489053..12499653
Genome browser
AA seq
2329 aa
AA seq
DB search
MPEMTETQTPGRKPKKKKNKESHNAVERHRKEKINAGINRIGNLLPCSQALKQSKNMILD
QAFRYITELKKQNDTMLLEGGDKVQAEEIRRMRRQLEELRKESAHYIELLKAHDINLLED
PTIHWKGKQRCAKVAKVTPTHQLPKGIIVYSNGNVMCPAGKETSPGKQPSETLILQPPSD
VSAGLRVNGALLQVNTSTSTPALLPGSTVTPTQSTPGLRVVEQCVIEKPAAAPTLPPSVS
YITLQLPTVPTTLPQQPQPAVPAQTLSIAATSASQLPTESPAPPVSIHTTLTQTVATSRA
AVSEVCSWVTEDTAIRNVSYTAIPNNQTLLTAAATGNTRTTWTTLQMAGNTVHPVCQSLA
TPEVSNISQAVQQVTVCPMGNKPSVQPIQIQMQPHVSVQQAPITAHIQAQPFQRQPQLRP
AILNQAQPILAPQTQCAVLPKPAVVAHPAIVSQPQSAVLQPTSLVPHPPTALIPQPQTLS
QPALVPQPQATVLPLLQTMQVLQVNPTGGTASGVTAPQNTNNNNPSVVILQQANACPSQS
VIREEVSNQTPCQHIVIIQAPNQAAPAPQNPQVGMVPAAVPAAVPALPTQIPTTSTSTSP
TSLQSVGGKQLVHILPRPVQPQMNHPLQVTQASTSPTVPPTPQTITVNGQVFALQPMKTS
ENASSQGGQSTLQLVQPTTTEEPTTNVALNSLGALSSLNQSISQGLPLTVSSQNNCQPPA
APSSLVQQKQQQPPAPAPLPVTTLALPVRQLQVPSLSPVKSGLVVNASKPAGKRLRTAVN
TKRLTAKRTKPAKKKELSQVKPAVTVSAKPAAAAEEDQTVIVSQCSTVKVTDIPPTCTTA
VTTTDCSKAIGNVTSTQTTLKMIVCSPSSGPTVFSQSHTQSKSSVSATQSDVLFSHTNTS
GMAAAVTTVSATSVKPSVSTTVAIESKSAVVSEVKQPSTSTPTSTTQSKSAAPSAVSRQS
RSVVSSAGATEVQYTSTTVSSACLTPVSTSATAAVSLNQATQPTSVCHSQASSTQNPPTC
NKPESQPTTSPSVSTTVTHSSMAPTFSAAHSSITAPTTSSEFRKRVTTTRAPTQQTVVNM
PILPLCHPAEVKPPQHPGRNSEVEDGRHSAAVAAEKEGLVATTSDTASRKDFVPSQQVYT
NLDDQTIDHPMTSSRQTDSPMSTGAGGGRGFSVASMLPQGHSISASSSSFGTFTFTSEQA
EMLALVMLEQDSPGRRTGGCSGENTASTNPTTATWEPPKTSTVSSSKERGSIGQQQAKVT
KPMDTVTVKPAVQVSVRGQVGEGSVSGPSGSRHPQNSSHLISYSQSQSLSSSQSGTVASL
SVNNLIRPSSNQQPYPGSPSLAGQQGSVPSPVGTSAHISQPSNNALSPCPGAAQLNEYAP
IKTALMRAQAGVGVGERQVKIISKRQAQEEVMLNTGKRPKPCPPSATTVSHMDVKAPDHT
QMMVGQLPSASSAIMTRINSEGGGPLFSTNSFMSPVVRPTDGHCPPQGPPEQNQPGVLHL
PQGHPQHAATQPGQHLGGNLYMKQQQQEQQRHHLYHLQHHLTQPDSAQRHSLHQRALQQQ
QQQQQQQQEQQQHVQKKRGLVRSSQTGSPAGLQKQHHLEKSGVQQQHSHPQQQTQHQQLT
QQQQSQQHPQQSHQQSQHQQPTQHQQSQHQQHQQQTHQQQPQTQHQQHQQQQLQQQQQSS
HSRHQQHLQQQIQQQQQHFRHQEKSCEAQAAGPRAHHSSHLAQQEHLKSGQDHNAMQRMM
SSRTLEQQLISPSSNPVSRSSDLACAPSRQERHRVSNYSAEALIGKSSTSGEQQRMGLHL
QPGRGATQEQPDLRGYLDTSRGKANIAHNPQNRLPSDHPGSADVQRVSECPPFKAMGGGA
GAHQLSGFEAQVSRGSDMTPKSVPPSQRGPQGQQQGGFRMGVGPPADGRNRGGYTGVHLG
SQGVQVGPALPREQDGCHQSFMQSLLSPHLPEQSNHQRAVQCCPPVSMEYSCVPGSSAAD
IQAKASSPSVPQTQKAPAMRLGEGNKGHISQVNSNMHGVRAGLPHPPTPHSSSEPGRSSA
PSRPPTAVSQHSRHITRDTQAAKLRPGDRPRSGTLRSSNPFEPDGHLPLPSGGGVLLGRP
QSGGEARRSTIVRFMADSAQVPSDNNLVPDQHLTQNFGFPFIPEGGMNPPPPINPNSTFI
PPVSQPNASRTPSLLPVEPQNTLPSFYPSYSPAAHPSLPSDVTLQYFPNQMFPSPSADKG
NAPPLNNRFGSILSPPRPVGFGQAGFPLLPDMPPMPIANSSGITPHISNFSLTSLFPEIA
TGMPTDGSAMPMSPLLSLSNTSAADSGKQPNRPAHNISHILGHDGSSAV
NT seq
6990 nt
NT seq
+upstream
nt +downstream
nt
atgccagagatgactgaaactcagacacctggtcgtaagccaaaaaagaagaaaaacaaa
gaatcccacaatgcagttgagagacacagaaaagagaagataaatgctgggattaaccgc
atcggtaatcttctgccctgttcccaggcacttaaacagagtaagaacatgatcttggac
caggcttttcgctacatcactgaactgaagaaacaaaatgacacaatgcttttggaagga
ggggataaagtccaagctgaggagatccgtcgaatgcggcgtcagttggaggagctgagg
aaggagagtgctcactacatcgagctcctgaaagcccacgacattaacctgctagaagac
cccacgatacactggaagggcaaacagcgctgtgccaaggtggcaaaagtgactcccact
catcaactcccaaagggaatcatagtctactccaatggcaacgtgatgtgtcctgcagga
aaggagacaagcccgggaaaacagccttctgaaacattaattcttcagccaccttctgat
gtcagtgccgggttaagagttaatggagccttgctgcaagtcaatacctccacttctact
cctgctcttcttcctggatcaactgtcacacccacccagtctacaccgggcctgagagtg
gtagagcagtgtgtgattgagaaaccagctgcagcccccactctgccgccttctgtgtct
tacatcaccctccagctccctacagtccccaccaccctgccccaacaacctcagcctgct
gtcccagcccagacccttagcatagcagctacttcagcctcacagctccccactgaaagc
cctgctccacctgtttccattcacaccacgctaacacagactgtagccacctctagagca
gccgtctcagaggtctgctcttgggtcacagaggacactgccatcaggaatgtaagttac
actgctatcccgaacaaccaaacacttcttacagctgcagcaacaggcaacacacggact
acttggacaacactgcagatggcagggaacacagtgcatccagtctgccagagtctcgcc
accccagaggttagcaacatcagccaggctgtccagcaggtgactgtgtgtcccatgggc
aacaaaccatctgttcagcctattcaaatacagatgcaacctcatgtttctgtacaacaa
gcacccattacagctcacattcaagcgcagccctttcagagacaaccgcagctacggcca
gcaatcctgaaccaggcacagcctatcctagccccccaaactcagtgtgctgttcttcca
aagccagctgtggtggctcaccccgccattgtgtcacagccgcaatctgctgttctccag
cccacgtcactggttcctcatcctccaacagccctcattcctcagcctcagaccctctct
cagccagccctagtgccccagccacaagccactgtgctgccccttcttcagaccatgcag
gtgctgcaggtcaacccaactggaggaacagcctcaggggtaacagcaccacagaacact
aacaacaacaacccaagtgtggtcatcctgcagcaagccaatgcctgcccttcacagtca
gttataagagaggaagtatccaatcagacaccctgtcagcatattgtaatcatccaggca
cccaatcaggctgcacctgcccctcaaaatcctcaggttggcatggtgcctgctgctgtg
cccgctgcagtacctgcattgcccactcaaatacccacaaccagcacttcaacatctccc
acttctttacagagtgttgggggaaagcagttggtgcatattctcccacgccctgttcag
cctcaaatgaaccatcctctgcaggtcacgcaggcatccacttccccaacggttcctcca
accccacagactatcactgtgaatggtcaggtgtttgccctgcagcccatgaagacctct
gaaaatgccagctcccagggtggccagagtacactacagctggttcagcctaccaccact
gaggaaccaactaccaatgtggccctcaacagtttaggggctctcagcagtctcaaccag
agtatctctcagggccttccacttaccgtttctagccagaacaattgtcagcctccagcc
gctccatcatcacttgtccagcagaagcagcaacaacctcctgctccagcacccctccct
gtaaccacacttgctctacctgtgcggcaattgcaggtcccttcattgagcccagtcaaa
tcagggctggtggttaatgcctctaagcctgcaggaaagaggcttcgcacagctgtcaat
acaaagaggttaacagctaaaaggaccaaaccagccaagaagaaagagctcagtcaggtg
aagcctgctgttactgtttcagccaagcctgcggctgctgcagaagaagatcagacagtt
atagtgtcccagtgctcaactgtaaaagtcacagacattccccccacttgtaccacagct
gtcacaacgacagattgcagtaaagctattggaaatgtcacttccacacaaacaacactg
aaaatgattgtgtgtagtccatctagtgggccaactgtatttagccaatcccacacacag
agcaaaagctctgtcagtgcaactcagagtgatgttttattcagtcacacaaacactagt
ggtatggccgctgcagttacgactgtcagtgccacatcagtcaaaccatcagtaagtaca
actgtggccattgagagtaaatctgctgtagtttctgaggtgaaacagccaagcaccagt
acaccaactagcacaacacaaagtaagtcagctgcgccttctgctgtttctagacagagc
agatctgtggtcagttctgcaggtgccactgaggttcagtacacttccaccactgtttct
tctgcgtgtctgactccagtcagcacctcagccactgcagcagtatctttaaaccaggct
acccaaccaacttctgtatgtcattcccaggcatctagtacccaaaatcctcctacctgc
aataaacctgagtctcagcccaccacttcaccctctgtgtccactacagtgacacactca
tctatggccccaactttttctgcagcccatagctccattacagcacctacaacaagttca
gagttcaggaaaagggtcacaaccactagagcgccaacacagcagactgttgttaacatg
cccattctccccctgtgccatcctgccgaagtcaaaccgccccagcaccctggaaggaac
agtgaggttgaggatggaagacactctgctgcagtagcagcagagaaagagggcttggtg
gcaaccacatctgacactgcttctaggaaggactttgtcccttctcaacaggtgtacact
aacctagatgatcaaaccatagatcaccctatgacatctagcagacagacagactctccc
atgtctacaggggcggggggaggcagagggttctctgtggcttcaatgcttcctcagggt
cacagtattagtgcgtcatctagctcctttggaacatttacattcacatctgagcaggca
gagatgctggctttggtcatgctggaacaggacagtcctgggaggaggacaggaggatgc
tctggggaaaacactgcttcaacaaaccccaccactgccacatgggagcccccaaagact
tcaacagtgtcaagcagtaaagaaagaggctcaattggacaacagcaagctaaagtgact
aaacccatggacacagtaactgttaaacctgcagtccaggtatctgtcagaggacaagtt
ggggaggggtctgtcagtgggcccagtggaagcagacatccacaaaactcatctcatctc
atctcatactcccagtctcagtccctcagctcctcccagagtggcactgtggctagcctc
agtgtaaacaaccttatcaggcccagctccaatcagcagccctatcctggctctcccagt
cttgctggccaacagggctcagttccttcacctgtggggacctcagcccacatatcccaa
ccctcaaataatgcactctcaccctgcccaggtgcagcccagctgaacgagtatgcccct
ataaaaactgcattaatgagggctcaggctggagtcggtgtgggtgaacgacaagtgaag
atcatctccaagcggcaggcccaggaggaggtgatgctaaacactggaaaacgacccaag
ccttgccctccatcagcaaccactgttagccatatggacgtgaaagccccagaccatacc
cagatgatggtgggacaacttccctccgcctcttcagccataatgacgagaattaattct
gagggtggtggtcctctcttctccacaaactctttcatgagtcctgtagttcggcccaca
gatggccactgtcctcctcaaggaccccctgaacagaaccagccaggggtgcttcatctg
ccccagggtcatccgcagcatgctgcaacccagcctggccagcacctgggtgggaacctt
tacatgaaacagcagcagcaagaacaacagagacaccatctgtatcatttgcaacaccac
ctgacacagcctgactctgcacagcggcactcgctacaccagagggcgcttcagcagcag
caacaacaacaacagcagcagcaggagcagcagcaacatgtgcagaagaagcgaggactc
gtcagaagcagtcagaccggttcacctgccggcttgcagaagcagcatcacctggaaaag
tctggagttcagcagcagcactcacatccacaacagcagactcaacatcaacagctcaca
cagcagcagcaatcacagcagcatccacaacagtcccaccaacaatcacaacatcagcaa
ccaacccaacaccaacagtctcagcaccaacagcaccaacaacagacacatcaacagcag
ccccagacgcagcatcaacaacaccaacagcagcagttacagcagcagcagcagagctcc
cactccagacaccagcagcatcttcagcagcagatccagcagcaacaacagcactttagg
caccaggagaaaagctgtgaagcccaggcagcaggacccagagcccaccacagcagccac
ctggcccagcaggagcaccttaagtctggtcaggaccataatgctatgcagaggatgatg
agctctcggactctggagcagcagctcatctctccttccagtaatcctgtgtcccggtcg
tctgacctggcctgtgcaccatcacgccaggaacgccaccgtgtttccaactactctgcg
gaggcgctcatcggtaaaagctccactagtggtgagcagcagcgtatgggtcttcacctt
cagcccggccgcggtgccacacaggagcaaccagacctccggggttacctggacacatca
cgtggaaaggccaacattgcacataatccacagaaccgcctgccctcagaccatccaggg
tctgccgatgttcaacgggtgtctgagtgcccccccttcaaggccatgggtggaggagca
ggagcacatcagctcagtggatttgaggcacaagtgtctcgtggaagtgacatgacccct
aagtcggtgcctccttcccagaggggaccgcagggacagcagcagggcgggttcaggatg
ggtgttggccctccagcagatggcagaaaccgtggtggttacactggagttcatctcggc
tcgcagggagtacaggttggcccagcgctgccccgggagcaggacggttgtcatcagagt
ttcatgcaaagcctcctttctccacacttacctgagcagagcaaccatcagcgagcagtg
cagtgctgtcccccagtcagcatggagtacagctgtgtgcccggaagctctgcagcagac
atacaagccaaggcctccagccccagtgttccccagacccagaaggccccagctatgagg
cttggagagggcaacaagggccacatttctcaggtcaacagtaacatgcatggtgtgcga
gcaggtctcccccatcctccaaccccacacagcagctctgagccaggccgctcgtctgcc
ccttccagaccgcccactgctgttagtcagcattctcgccacatcacccgtgatactcag
gctgccaaactgagaccgggtgaccggcctcgatcaggtactctgagatcaagtaacccc
tttgagcctgacggtcacctgcctctgccctctggaggaggggtgctgctgggcaggccg
cagtctggaggggaggcaagacgcagcactatcgttcgctttatggcagatagtgctcag
gttcctagcgacaacaacctggttccagatcaacacctaacacagaactttggtttcccc
tttattcctgaaggagggatgaatcctccacctcccatcaatcctaactccacattcatc
cctccagtaagccagcccaacgcctctcgtacgccgtcccttctgcctgtggagccacag
aacactttaccttcattctatccttcctattctccagctgctcaccccagtctcccgagc
gatgtcaccctccagtactttcctaaccaaatgttccccagcccaagtgcagacaagggc
aacgctcctccactcaacaaccgcttcggctctatcctttccccgcctcgccctgtggga
tttggacaggcaggcttccccctgctgccagatatgccccctatgcctatcgccaactcg
tctggaatcacccctcacatatccaacttcagcctcacctctctgtttcctgagatcgcc
acaggcatgcccactgatggctcggccatgcctatgtctcccctgctgtcgctctctaac
acctcggctgccgactctggcaagcagcccaaccgtcctgcccacaacatcagtcacatc
ctgggccatgacggtagctcggctgtgtga
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integrated database retrieval system
