KEGG   Scomber japonicus (chub mackerel): 128382703
Entry
128382703         CDS       T09718                                 
Name
(RefSeq) poly(U)-binding-splicing factor PUF60-like isoform X1
  KO
K12838  poly(U)-binding-splicing factor PUF60
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128382703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sjo03041]
    128382703
Spliceosome [BR:sjo03041]
 Complex A
  U2 snRNP components
   U2 related factors
    128382703
 Complex B
    128382703
SSDB
Motif
Pfam: RRM_1 DUF1543
Other DBs
NCBI-GeneID: 128382703
NCBI-ProteinID: XP_053198685
LinkDB
Position
21:5738129..5752701
AA seq 546 aa
MAVTETAGAEALTMENGQGTGSKLGLPPLTPEQQEALQRAKKYAMEQSIKSVLVKQTIAH
QQQQLTNLQMAAVTMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
PFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
AQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCTLARDPTTGRHRGFG
FIEYEKPQSALDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPPAAAVAAAAAT
AKITAQASMNPFQRDLMAFQEAVAGASVLGALAAPQLLGQQMGIPQAVMAAQAPGVITGV
YQNMSVTPVRPPLPVLPQVGLVNPVLASPPVLSNQAGGSGLVEKKEEKEEMLQDGTGQEM
LSDQEHMSISGSSARHMVMQKLLRKSESTVMVLRNMVGPEDIDDDLEGEVTEECGKFGSV
NRVIIYQEKQGEEEDADIIVKIFVEFSMASEMNKAIQALNDRWFGGRKVVAEVYDQDRFN
SSDLSA
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggcggtgacggagactgcgggcgctgaagctctgacgatggagaatggacagggcaca
ggctccaagctcggcctgccgcctcttaccccagagcagcaggaggcacttcagagggca
aagaagtatgccatggaacaaagcattaagagtgtgttggtgaagcagaccattgcccat
cagcagcaacagctcaccaacctgcagatggcagcagtgacaatgggctttggagatcct
ctctcacctttacaatcggtggcagctcagcggcaacgcgctctcgccatcatgtgtcgg
gtgtatgttggttccatatactatgagcttggtgaggacaccatcagacaggcctttgcc
cccttcggcccaatcaagagcattgacatgtcttgggattcagtaacaatgaaacataag
gggtttgcctttgtggagtacgatgtgccagaggctgctcagctggctctggagcagatg
aactcagtcatgttgggggggcgaaacattaaggttgggcggccaagtaacatcggtcag
gcgcaacccatcattgaccagctggcagaggaggcgcgcgcttttaaccggatctacgtg
gcgtccgtccaccccgacctgtcagatgatgacatcaaaagtgtgtttgaggccttcgga
aggatcaagtcttgtacgttagccagggatcccaccacaggacgacaccgaggctttggc
ttcatcgagtatgaaaagccacagtcagccctggatgctgtctcttctatgaacctcttt
gacctggggggtcagtaccttcgggtgggcaaagcagtgacaccgcctatgcccctactg
acccccacgacccctggtggtctgccgcctgcagcagctgtggccgcagcggcagccacc
gctaagataacggcccaggcaagtatgaatcccttccaaagggatttaatggccttccag
gaggctgtagccggggcatcagtcctgggggcgttagcagcgccccagcttctcggtcag
caaatgggaatacctcaggctgtcatggctgcccaggcaccaggggtcatcacaggtgtg
taccaaaacatgagtgtgacaccagtgcgtcctcccctaccagtacttccccaggtgggt
cttgtaaaccccgttctcgcatcgccaccagtcctgtctaatcaagctggaggctccggc
ctagtagagaagaaagaagagaaagaggagatgcttcaggatgggacgggacaggaaatg
ctgagtgaccaagagcatatgagcatttcgggcagcagtgccagacatatggtgatgcag
aagctgttacgaaaatcagagtccacagtaatggtacttcgaaatatggtcggacccgag
gacattgacgacgacctggagggcgaggtgacggaagagtgcggcaagttcggctccgtc
aacagagtcatcatctaccaggaaaagcaaggggaagaagaagacgcggatatcatcgtt
aagatctttgtagagttttccatggcctccgagatgaacaaagccatccaggccctgaac
gaccgctggttcggaggtcgtaaagtagtcgcggaggtgtatgaccaagaccgtttcaac
agtagtgacctctctgcgtaa

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