Scomber japonicus (chub mackerel): 128382732
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Entry
128382732 CDS
T09718
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128382732 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sjo00536
]
128382732 (col11a1a)
Glycosaminoglycan binding proteins [BR:
sjo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128382732 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
128382732
NCBI-ProteinID:
XP_053198715
LinkDB
All DBs
Position
21:18777621..18863020
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AA seq
1810 aa
AA seq
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MEMQRWSTRWKTKRWLMDSTLTAFITLTLVLHAATVTAAEPVDVLKVLDFQNTPEGVTKT
SGFCTNRRASEPDTAYRVAKQVQISAPTTQLFPGGVFPEDFSILTTLRPKSGLQSFLLSI
YNEQRVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRALNLADGKWHRVAISVEKKTVTI
IVDCKKKIVKPLLRSDHAAISTNGVTTFGTRIQDEEVFQGDIQQLLIVADPKAAYDYCEH
YSPDCDTPHSDSLQAQQPEEEYTTDDLDYSQFYDYPDGATDTASTDEYSEPQLNNVEGDY
NTDIDYGTVDGTQTHSPFATNGPMEAVEEDVFGDYATEATAVAPEPTIVPEKDNVDSGAD
AYDFKEYDLKEYDLGEVGSRSYDYGAYDEYGTVQSKPTGANNDEVGPGVAAETDVTESSV
AGVEGDFGQKGEKGEPAVIEPGMLIEGPPGPHGPAGLPGPSGLQGPPGPSGDPGDRGPPG
RAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMG
LTGRSGPVGLPGSNGQKGEGGDPGPQGPRGIQGPPGQTGKAGKRGRAGADGARGMPGEPG
SKGDRGFDGLPGLPGEKGHRGELGPMGPIGAPGEDGQRGEDGEIGPRGLAGESGPRGLLG
PRGSPGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKG
PQGRSGLSGLPGADGPPGHPGKEGPPGEKGGQGPAGPQGPIGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGIKGDRGELGMLGPRGEDGPEGPKGRSGPSGESGPLGPAGEKG
KLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGGRGARG
PTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG
STGKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGSAGPAGPIGLSG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPG
QKGSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPVGSVGEKG
EQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGVAGTDGEAGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQG
EKGAKGEAGAEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPMG
PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDGGINGASG
PLGPPGPPGLPGPQGPKGSKGSSGPAGPKGDTGSVGPPGPPGSPGEVIQPLPIRSPKKTK
RSSDMQSDAVGTLMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPE
FPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFK
RGKIFSYVDADGSSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYDKALRFLG
ANDEEMSYDNNPYIKAISDGCAMRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccact
ctaaccgcattcatcactttaaccctggttctacatgctgccactgtcacagcagcagag
ccagtggatgtgctaaaagtattagattttcaaaataccccagaaggagtgacgaaaaca
tcaggattttgcacaaaccgaagagcatcggagccggacacagcttacagagttgccaag
caggtccagatcagtgcccccaccacacagctattccctggaggtgtttttcctgaggac
ttctctatcctgaccacactgcgccccaagtccggcctccagtccttcctgctgtccatt
tacaatgagcagagagtccagcagctgggtgtggaagtgggacgctcacctgtcttcctg
tatgaggatcagactggcaaaccagccccagaggactaccctctgttccgtgctctcaat
cttgctgacggaaagtggcaccgtgtggccatcagtgtggagaagaagacagtcaccatc
attgtagactgtaagaagaagatcgtcaagcctctcctcaggagtgaccatgctgccatc
agcaccaacggcgttaccacgttcggtaccagaattcaagatgaggaggttttccagggt
gacatccagcaacttctgattgtggctgatcccaaagcagcttatgactactgtgaacat
tacagcccagactgtgacactccccacagtgactccctgcaggcccagcagccagaggaa
gagtacactactgatgatttagattactctcagttctatgattaccctgacggagctaca
gacaccgcttcaactgatgagtattctgaaccacagctaaacaatgtagaaggagattac
aatacagacattgactacggaactgtagatggtactcaaactcattccccctttgccacg
aatggacccatggaggctgtggaggaggatgtctttggcgattatgccacagaggccact
gccgttgctccagaacccaccattgtcccagaaaaggacaacgttgacagtggtgcagac
gcatatgactttaaggaatatgacctaaaggagtatgacttgggtgaggttggcagcagg
tcgtatgattacggggcatatgatgagtatggcacagtccaatccaaacccacgggggcc
aacaatgatgaggtgggccctggggttgctgctgaaaccgacgtgactgagagctccgtt
gctggtgttgaaggagactttggccagaaaggagaaaagggcgagccagccgtgattgaa
cctggcatgctgattgaaggaccaccaggaccccatggcccagctggtcttccaggtccg
tcaggcctacaaggacccccaggaccttctggagatcctggtgacagaggtcctcctggt
cgtgctggtctgcctggtgctgatggtttgccaggaccccctggtaccatgctaatgctg
ccattccgttttggtggagatggtgagaagggtccagtggtatcagcccaagaagcccaa
gctcaggccatcctctcccaggccagactggctatgaggggacccccagggccaatgggt
ttgacaggaagatcagggccagtgggtctacctggttctaatgggcagaaaggtgaaggt
ggagatcctggtcctcagggtccccgtggaatccaagggcctccaggacaaactggcaaa
gctggcaaaaggggtcgtgccggagccgatggtgcccgtgggatgcccggagagccaggc
tccaagggtgaccgaggctttgatggactccctggattgcctggtgaaaagggacacagg
ggcgagctagggccaatgggacccataggtgcccctggagaggatggacagagaggcgag
gatggagagatcgggcccagaggacttgctggcgagagtggtcctagaggtttgctggga
cctcgtggttctccaggaccccctggatcacctggtgttgctggagttgatgggcctcct
ggtcccaaaggaaacatgggaccacaaggagagccaggcccacccggtcagcagggaatc
cctggaacacagggtctccctggtcctcaaggccccattggaccacctggtgaaaaagga
cctcagggcaggtcgggattgtctggattacctggagctgacgggcctcctggtcatcct
ggaaaggagggtccacctggagagaaaggaggccagggtccagcaggtccacagggccct
atcggttatcctggccctcgtggtgtcaagggtgctgatggtgtccgtggtctcaagggt
tcaaagggagagaagggcgaggatggtttcccaggtttcaagggagacatgggaatcaaa
ggagaccggggtgagcttggcatgcttgggccccgtggagaggatggtcctgagggtcct
aaaggccgatctggtcctagtggagaatcaggtcctcttggtcccgctggggaaaagggt
aaactgggcgtcccaggattgccaggctatccaggaagacaaggacccaagggctcgagt
ggtttccctgggttccctggagcaaacggcgagaaaggagccaggggtgttgcaggcaaa
cctggtccaagaggacaaagaggtcccacgggtcctcgtggaggtcgaggagccagaggt
ccaacaggaaaaccaggtcccaagggcacagcaggcaatgacggtcctccgggcccgcct
ggtgagagaggacctcaaggacctcagggaccagtaggtttccctggaccaaagggccca
cctggaccacctggaaaggatgggctgcctggacaccctggccagcgtggagagacaggt
ttccaaggaaaaactggtccaccaggtccaggaggtgttgttggaccccagggacccact
ggagagaccggtcctgttggtgagagaggtcaccctggaccccctggtccacccggagag
cagggtcttccaggtgctgctggcaaggagggagcaaagggagaccctggaccacaaggg
tctactggtaaagatggtccccctggccttcgaggcttccctggagagagaggtctacct
ggtgctacgggtccagcaggtctgaagggaggagagggaccccaaggtccacctggtcct
gttggttctcctggtgagagaggttctgctggtccagctggtccaattggcctgtctggt
agacctggccctcagggtcccccagggcccgctggagagaagggagcacctggcgagaaa
ggtcctcaaggtccagctggtcgtgacggtgtccagggtcctgttggtctgcccgggcct
gctggaccccagggtccacctggagaagatggtgacaagggtgaggttggagagcctggc
cagaagggaagcaaagccgacaagggagaacagggtcctcctggaccagctggtctccaa
ggtcccattggtgccccaggtcctgctggagctgatggagagcctggacccagaggtcag
cagggtatgttcggacagaagggagatgaaggatccagaggtttccccggaccccctggt
cccatcggtctgcaggggcttcctggacctcctggtgagaagggagagaatggtgatgtt
ggccccatgggccctcccggtccccctggtcccagaggtcctcagggtcctagtggagct
gatggtccccaaggtcctccaggtggagtgggccccgtgggatctgtgggagagaagggt
gaacaaggtgaagcaggaaacccaggaccacctggagagcctggaactgggggacctaaa
ggcgagagaggagaaaaaggagaggctggcccccctggagctgctggacctgctggtgcc
aaaggaccccctggagatgatggtccaaagggcaaccctggtcccgttggattccctgga
gaccctggtcctcctggagagccaggtgttgctggcacggatggagaagcaggagaaaag
ggagaggatggagaggccggtcagccgggaccaccaggtccatcaggagaagctggtcca
cctggcccacctggcaagagaggacctccgggcgctgctggtgcagagggcaggcaagga
gagaaaggcgctaagggtgaggctggtgccgagggtccagcaggtaaaacaggaccagtt
gggccccagggaccttcaggaaagcctggtccagagggtcttcgtggaatccccggccct
gtcggtgaacaaggactgcccggctccccaggacaagacggtccacctggtcctatgggc
cctcctggtcttcctggtctgaaaggtgaccccggctctaagggtgaaaagggtcaccca
ggtttgattggtctgattggaccccccggagaacaaggagagaagggagaccgaggtctg
cctgggccccaaggttctcctggtggcaagggcgatggtggtatcaatggagcttctggt
cctctcggtcctccaggtccccctggtctgcctggtcctcaaggtcccaagggatccaag
ggttcatctggtcctgcaggtccaaaaggagacactggttcagttggtcctcctggtcct
cctggctcaccaggtgaggttatccagcctcttcccatccggtcacccaagaagacgaag
cgctccagtgacatgcagtcagacgcagtcggtaccctcatggactacggcgagggcatg
gaggacatcttcggctcactcaacaacctcaaacaggacattgaacgtatgaaatacccc
atgggcacacaaaacaaccctgccagaacatgcaaagacctgcagctctgccacccagag
ttccctgatggcgaatactggattgatccaaaccaaggctgctcgggggattccttcaaa
gtctactgtaacttcactgccgggggcgaaacctgcatctacccagataagaagtccaat
ggagttagaatatcttcatggcccaaagaagtccctggttcatggttcagtgaatttaag
cgtggtaaaatattttcctatgttgacgcagatggaagctcaataaacatggtacagatg
accttcctcagactactgacagcctcagccaggcaaaacttcacctacagctgccaccag
tccgtggcgtggcacgacgccaccagtgacagctacgacaaggcgctgcgcttcctgggt
gccaacgatgaggagatgtcctacgacaataacccctacatcaaggccatctcagacgga
tgtgcgatgaggaagggctatggaaagactgtgatggagattaatactcccaaaatcgat
caggttccaatcatcgatgtcatgttgactgactttggggaccctaaccagaaatttggg
tttgaagttgggcccgtctgcttccttggctaa
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