Scomber japonicus (chub mackerel): 128382875
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Entry
128382875 CDS
T09718
Symbol
trim55b
Name
(RefSeq) tripartite motif-containing protein 55b
KO
K10654
tripartite motif-containing protein 55
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128382875 (trim55b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128382875 (trim55b)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128382875 (trim55b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_2
zf-RING_5
zf-B_box
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
zf-Nse
MTCP1
PPP1R21_helical
zf-RING_10
Zn_ribbon_FGT1_2
zf-RING_11
DUF5318
Motif
Other DBs
NCBI-GeneID:
128382875
NCBI-ProteinID:
XP_053198848
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All DBs
Position
21:13003939..13007892
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AA seq
365 aa
AA seq
DB search
MNSMENLEKQLTCPICLEMFTKPVVILPCQHNLCRKCANDVFQASNPYLPTRAGSLTSGG
RFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMFKQESSSSKPTPESIEETPMCDVHKDE
KINIYCVTHSVPTCSMCKVFGAHKECEVAPITSIYQTKKTELSDGIAMMVGNNDRMQGII
SQLEEACRAIEENGRRQKTLVCEKFDHLYSILEEKKREMSQKVTVEQEEKVNYIRGLTKK
YGDHLEESCKIVEMGIQTMEEQEMAVFLQSTKDILKKISEASSTAHLDKIERGYENMDHY
TVNFKEEGKALRTIDFIQDDEDEDDEDEDGEAGTEEGEGAQTTSGGDAVTAASSSPSAAI
SAAST
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcatggagaacttggagaagcagctgacttgtcctatatgcctggaaatgttt
actaagcctgtggttatcctgccctgccagcacaacctctgtagaaaatgtgccaatgat
gttttccaggcttcgaatccatacctcccaacaagggctggctctttgacatctggtggc
cgattcagatgcccgtcttgcagacatgaggtggttctggacaggcacggggtttacggg
ctgcaaaggaacctgctggttgagaatattattgacatgttcaagcaggagtccagcagc
agcaagccaacgccagagagcatagaagaaacgcccatgtgtgatgttcataaggatgaa
aagatcaacatttactgcgtgacccacagcgtgcccacatgctccatgtgtaaggtattt
ggagcccacaaagagtgtgaggtggcacctatcaccagcatctaccagacaaagaagacg
gagctgagtgacgggattgccatgatggttggtaacaacgacaggatgcaaggcatcatt
agtcagctagaggaagcctgtcgtgccatagaggagaatggtcggaggcagaagactctg
gtgtgtgagaagtttgaccacctgtactccatcttggaagagaaaaaaagggagatgagt
cagaaggtcacagtcgagcaagaggagaaggtgaattatatccgggggctgaccaagaag
tacggagaccatctagaggagagctgtaagattgtggagatgggaatacaaaccatggag
gagcaagagatggctgtatttctgcagagcacaaaggatatcctcaaaaagatttcagaa
gcctccagtacagcacatttggataaaattgagcgtgggtatgagaacatggatcattac
accgtcaacttcaaggaagagggcaaggccctgcgcaccatcgacttcatccaagatgat
gaagatgaggatgatgaggatgaggatggagaggcaggcactgaggaaggagagggggct
cagactacttcaggtggagatgctgttacagccgcctcctcatctcccagtgcggccata
agtgctgcttcaacctag
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