Scomber japonicus (chub mackerel): 128383510
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Entry
128383510 CDS
T09718
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like
KO
K06727
Fc receptor-like protein
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sjo04090
]
128383510
CD molecules [BR:
sjo04090
]
Proteins
128383510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
ig
V-set
I-set
Ig_5
Ig_4
Adeno_E3_CR2
Syndecan
Motif
Other DBs
NCBI-GeneID:
128383510
NCBI-ProteinID:
XP_053199097
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All DBs
Position
22:18499515..18833385
Genome browser
AA seq
1468 aa
AA seq
DB search
MRSTLICVLGLFLMNTLCYGQYEDVILESPAFTLFEGDSVTLRCSHRPPGNEKEATFYRD
GSPLELDTNHQSYRISDTAVEMTIHSVSVSDRNLYKCKFDGGRESEERRLQVEAGRRRVT
LTADRKTIRGQQSVTLTCIMEDSADWEYDWFRKTSTDSGKPLQTADDGESNRFSISQGGI
YTCRGRRSEPDALTPESNEVTIEETVSNKAVVTLQPNWSLIYSGETITVRCEIERGGNTR
WEYEWRVNNLDSPQKDKEFRIRASSSSNINFMCKGRRDLYSSTEWSEAVTLRQSLNKAKP
TLTADRSIIPVGGSVTLSCSVDSSADWKYYWFRRDSGSSALQFITNVKPVNKVSEGGIYQ
CRAGRGNPEISTEYSRAVTVWKTVSNKAVVTLQPNGPLIYSGETITVRCEIEEGENTRWE
YEWRVNNLDISHKDYEYKIISASHSGDYRCKGRKDSYSSTDWSDAIRLTVSPNKPKPTVT
ADKTITPVGGRVTLSCSVDDSPDWKYDWFRQTSESSAPQLIRNVNPDRVTSVYEGGIYYC
RGGRGDSVFYTEDSNKVTIQETVPNKAFVTLQPNWPEIYSGETVTIRCEIQGGGDTKWTY
EWRPDNLNTSPTLSEHKISSTDYDSGGYSCRGLKDSYSFTEWSNVIRLTVSSNKPKAKLR
ADNRDIPVGGSVTLTCSVDSSSSGWKYYWNKSPGPLTTQDAVLQSNGQIKVSQGGSYWCR
GGRGDPVYRTEYSDSIWINNIVSNKAVVTLQPNWTEIYRGETIVLRCEIHEGDTEWEYEW
KSPRYTSTKKNEYMISNASSQHSGNYRCRGKMKNEGHNSTEWSADITLTVSDSKSAVLTV
SPLWLSPGDSVTLSCEVEHPSAGWRFYWYKTVPKLSDNSYIYELLPGSISGTEQDSYIIH
GPTHTAGYMCRAGRGDPVYYTQYSKPGFVWSGDVHSAVTLKVSPDRVQHFTSDSVSLSCE
GNFTKWRVRSFPENRYRSDWYNWRSMTESTCNIYSSQQSDAVYWCESGSGEFSSAVNITI
QKADIILVSPVHPVTEGQSVTLGCKLRTGGLLSNVFFYQNDKLIQNDTRRELNISAVSKS
DEGFYKCKQSGKESAQSWMSVQDPAAVVTVSPLWLSPGDSVTLSCEVKHPSAGWRFYWYK
TVPKRSDYSYIYELLPGSINGTEQDSYIIHGPTHTAGYMCRAGRGDPVYYTQYSKPGFVW
SGDVHSAVTLKVSPDRVQHFTSDSVSLSCEGNFTEWRVRSFFPEDQNRSDCNWRSMTGST
CNIDSYHQSDAVYWCESGSGEFSNAVNITTQNADIILVSPVHPVTEGQSVTLGCKLRTGE
LLSNVFFYQNDKLIQNDTRRELKISAVSKSDEGFYKCKHSGEESAQSWMSVQAVSRPENS
SSLVPLIVGLVCGVVFIILLILLYLYKRSKDSHSVRPIQSESTNQDSATHHMVNLNETQD
HIYNSLLHGDVSIYESIRGSEDPENGKV
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtccactttgatctgtgtgctgggattattcttgatgaatacactctgctacgga
caatatgaagatgtgatcttggaaagtcctgcattcacattgtttgagggagactcagtg
actctgcgctgtagccatcgtcctcctggaaatgagaaggaagccactttctacagagat
ggatcgcctcttgaactggacacaaaccatcaatcatatagaatatcagacactgctgta
gaaatgaccattcattcagtatcagtgtcagacagaaacttatataagtgtaagtttgat
ggaggaagagaatcagaagagagacgactacaagtggaagcaggtagacgcagggttaca
ctgacagcagacaggaagaccatacgaggacagcagagtgtgacactgacctgcattatg
gaggactctgctgactgggaatatgactggttcagaaaaacctcaacagattctggaaaa
cctcttcagacagcagacgatggtgaatcaaacagattcagtatctcacagggaggaatt
tacacctgcagaggacggagaagtgaaccagatgccctcacacctgaaagtaatgaagtc
accattgaggaaactgtttccaacaaggctgttgtgactctgcaacccaactggtctctg
atatacagtggtgagacaatcactgtcaggtgtgagatagagagaggtggaaacactcga
tgggaatatgaatggagagtaaacaacttggactcacctcagaaagacaaagaattcaga
atcagagcttcttcatccagtaatataaacttcatgtgtaagggtagaagagatttatat
tcctcaacagagtggagtgaagccgtcacactgagacaatcattgaataaagccaaaccg
acactgacagcagacagatccatcataccagtaggaggcagtgtgacactgagctgctct
gtggactcctctgctgactggaaatactactggtttagacgtgactcaggttcttctgct
cttcagttcataacaaatgttaaaccagttaacaaggtctcagaaggaggcatctatcag
tgcagagcaggaagaggaaacccagagatctccacagagtacagcagagcagtcactgtt
tggaaaactgtttccaacaaggctgttgtgactctgcaacccaacggtcctctgatatac
agtggtgagacaatcactgtcagatgtgagatagaggaaggtgaaaacactcgatgggaa
tatgaatggagagtaaacaacttggacatatctcacaaagattatgaatacaagatcatc
agtgcttcccacagtggagactacaggtgtaagggcagaaaggactcatattcctcaaca
gactggagtgatgccatcagattgacagtatcaccaaacaaacccaaacccacagtgaca
gcagacaaaaccatcacaccagtaggaggcagagtgacactgagctgctctgtagacgat
tctcctgactggaaatacgactggttcagacaaacctctgagtcttctgcacctcaactc
ataagaaatgttaacccagacagagtcacaagtgtttatgaaggaggcatctactactgc
agaggaggaagaggagactcagtcttctacacagaggacagcaacaaagttactattcag
gaaactgtccccaataaggcttttgtgactctgcaacccaactggcctgagatatacagc
ggagagacagtcaccatcagatgtgagatccagggaggtggagatactaagtggacgtat
gaatggagaccagacaacttaaacacatctccaacactcagtgaacacaagattagcagc
actgattacgacagtggaggatacagttgtagaggactgaaggactcatattcctttaca
gagtggagtaatgtcatcagactgacagtatcatcaaataaaccaaaggccaaactgaga
gctgacaacagagatattccagtagggggcagtgtgaccctgacctgctctgtggactca
tcatcatctggttggaaatactactggaacaaaagtcctggacccctgaccacacaagat
gctgttttacaatcaaatggacaaataaaggtctcacagggaggatcctactggtgcaga
ggagggagaggagacccggtttaccgcacagagtacagtgattcaatctggatcaacaat
attgtctcaaataaggctgttgtgactctgcaacccaactggactgagatatatagagga
gagacgatcgtgctgagatgtgagatccatgaaggagacacagagtgggagtatgaatgg
aagagtccccgttacacatctacaaagaaaaatgaatacatgattagcaacgcttcttca
caacacagtggaaactacaggtgtagaggcaaaatgaaaaatgaaggacataattcaaca
gagtggagtgctgacatcacattgacagtatctgatagtaagtctgctgtcctcactgtg
tctccattatggctgagtcctggagactcagtaactctgagctgtgaggttgaacatcca
tctgcaggatggaggttttactggtataagactgttcccaaactatcagacaactcctac
atctatgagctgctacctggtagcatcagtgggactgaacaggattcctacatcattcat
ggaccgacacacacagcaggatatatgtgtagagctggaagaggagacccagtgtattac
actcaatacagcaaacctgggtttgtttggtctggagatgttcattcagcagtgactctc
aaagtgagtcctgacagagtgcagcacttcacctctgactctgtctcactgagctgtgaa
ggaaactttactaagtggagagtgaggagctttcctgagaatcgctacaggtcagactgg
tataactggaggtccatgactgaatccacatgcaacatctacagttcacagcagagtgat
gcagtgtactggtgtgagtctggatcaggagagttcagcagtgccgtcaacatcactata
cagaaagcagatattatcctggtgagccctgtgcatcctgtgactgagggacagtctgtt
actcttggctgcaaactgaggacaggaggattactttccaacgtgtttttctatcaaaat
gacaaacttatccaaaatgataccagaagagagctgaatatctctgcagtgtcaaagtca
gacgaaggtttctacaagtgtaaacaatcaggaaaagaatcagcacagagttggatgtca
gttcaggatccagcagctgtcgtcactgtgtctccattatggctgagtcctggagactca
gtaactctgagctgtgaggttaaacatccatctgcaggatggaggttttactggtataag
actgttcccaaacgatcagactactcctacatctatgagctgctacctggtagcatcaat
gggactgaacaggattcctacatcattcatggaccgacacacacagcaggatatatgtgt
agagctggaagaggagacccagtgtattacactcaatacagcaaacctgggtttgtttgg
tctggagatgttcattcagcagtgactctcaaagtgagtcctgacagagtgcagcacttc
acctctgactctgtctcactgagctgtgaaggaaactttactgagtggagagtgaggagt
ttttttcctgaggaccagaacaggtcagactgtaactggaggtccatgactggatccaca
tgcaacatcgacagttatcatcagagtgatgcagtgtactggtgtgagtctggatcagga
gagttcagcaatgccgtcaacatcactacacagaatgcagatattatcctggtgagccct
gtgcatcctgtgactgagggacagtctgttactcttggctgcaaactgaggacaggagaa
ttactttccaatgtgtttttctatcaaaatgacaaacttatccaaaatgataccagaaga
gagctgaagatctctgcagtgtcaaagtcagacgaaggtttctacaagtgtaaacactca
ggagaagaatcagcacagagttggatgtcagttcaggcagtgtccaggcctgaaaactct
tcatctcttgtaccattaattgttgggctggtttgtggagttgtatttattattctcctg
atcctgttgtatctctacaaacgatccaaagattctcactctgtcagaccaatccagtct
gagagcaccaatcaggactctgccacacatcacatggtcaacctgaatgaaactcaagat
cacatctacaattctcttctccacggtgatgttagtatctatgaatcaatcagaggctct
gaagaccctgaaaacggtaaagtataa
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