Scomber japonicus (chub mackerel): 128383553 Help Entry 128383553         CDS       T09718                                  Symbol col4a6 Name (RefSeq) collagen alpha-6(IV) chain   KO K06237   collagen type IV alpha Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04382   Cornified envelope formation sjo04510   Focal adhesion sjo04512   ECM-receptor interaction sjo04518   Integrin signaling sjo04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sjo00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128383553 (col4a6)    04518 Integrin signaling     128383553 (col4a6)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     128383553 (col4a6)   09142 Cell motility    04820 Cytoskeleton in muscle cells     128383553 (col4a6)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     128383553 (col4a6)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:sjo04147]     128383553 (col4a6)    00536 Glycosaminoglycan binding proteins [BR:sjo00536]     128383553 (col4a6) Exosome [BR:sjo04147]  Exosomal proteins   Exosomal proteins of other cancer cells    128383553 (col4a6) Glycosaminoglycan binding proteins [BR:sjo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128383553 (col4a6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  128383553 NCBI-ProteinID:  XP_053199134 LinkDB All DBs Position 22:complement(21505200..21644215) Genome browser AA seq 1706 aa AA seqDB search MKFLICVIAVALAVGSTHGGTKFDGPCGGLDCSGGCKCNPEKGSRGRPGPLGEVGQSGPE GVRGPVGGSGPKGEKGHLGFRGPSGPKGDKGPMGVPGFQGADGVPGHPGQDGGRGPPGLD GCNGTRGESGLPGYGTGEPGPSGFPGPFGPKGQKGEPRFISTDNEILSLPGPPGLHGAPG LRGPDGQGGLPGPRGPEGFAGPPGPPGPPGLMGSRSDGYQGERGDKGDVGLPGPSGTPGD GSLRSEQTLTIYKGDQGEPGRKGSRGYPGNPGRPGPFGYRGEYGEKGIPGYPGGRGAPGF NGPPGSTGQQGYRGDPGYPGQQGYNGPKGDQGDTGPPGPPAYINNFGSSVQGEPGSPGLN GLPGAPGDQGSPGFPGPPGRPGVGYGSRGFPGAPGPKGEKGNSGAPAYGVEGIPGTPGLP GAPGPRGPAGPGGAGLSIPPCVIYPDGGSQGTSYPGQPGAPGPRGPQGGSGFKGFRGDPG DCACRGGGFSGGPGSPGPPGADGTPGFPGRKGELGDSGSPGFGGVQGPPGRPGPSGTFGR KGEKGASYYPNYGAGVKGESGSPGPRGPTGETGKSGRDGLPGFPGAPGLPGDAGYGTVGE KGFPGFPGQKGRPGGPGEPGQGFVGTPGFRGEPGDSGLAGLPGQPGLPGPRGENSCGGVN GTGEGTGTVLPCTIPGEEGAPGYPGGSGPPGPKGQAGFPGGSGRPGFDGAKGERGDPGFG GQPGPQGFPGPRGDAGSPGIPGQSFDGGRGKDGAAGRPGAKGLPGDVIGATPGSPGRDGF PGAPGDKGLPGTPGGPGSPGFDGRSGVPGLKGERGLDGYPGSPGLPGPPGELTNGFPGRP GAPGAKGLSGSPGCQGFPGRKGERGNPGFPARGGLKGAQGLPGIPGSPGPVGPTGPPGPP TREGIPGIPGRKGERGFAGLMGFPGLPGRPGTPGFPGGKGASGGPGRDGFPGSPGFTGPK GDRGYPGLPGVPAPILPVEFLEKGDLGIPGGSGLPGFPGPRGDKGFPGLPGRQGLPGLPG FSEQSKGQPGVPGYNGQPGSPGFPGPKGEPGIMGFPGMSGPRGDDGSPGFPGNPGEAGRP GGKGIPGDSYSYPGGPGPKGLTGDPGFSGGPGRDGAPGDNGFPGSPGFPGSKGGPGEAGR PGIMGSPGFPGPKGLPGYPGRKGQDGSPGLPGGPGGPGSKGLSGAPGLDGLNGLGGPKGL PGTPGATGGGLPGANGFPGAKGERGVSYAGGPGYPGAKGERGNQGGPGLPGFPGRPGPPG ETVGSDIPGPIGDPGYPGLDGESGFQGPPGPPGPPGPGTAQGDRGDSGLPGFPGSPGRKG ESGIPGGSGLPGSPGFKGEQGDSGYSGGPGLKGFPGDSGYYGLKGPKGLRGRQGGKGPPG ILLTRPLPPFEQKYGDMGTPGDSGGPGFPGEPGQSGLPGRPGPKGRPGPAGKLGRTGSVG LPGPVGDAGAPGFPGPSGEQGRPGSIGRVGPAGGVGRSFSIGYTLVKHSQNSQVPMCPQG MAQLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWL STTAPIPMMPVSEEQIQPYISRCSVCEAPSQAVAVHSQDMTIPTCPAGWRSLWIGYSFLM HTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVEPGQEFRY SPGQETLKEGQERFRVSRCQVCSKFL NT seq 5121 nt NT seq  +upstreamnt  +downstreamnt atgaaattcctgatttgtgtgatagctgtcgccttggcggtggggtctacacacggaggt accaagtttgacgggccgtgtggaggcctggactgcagcggaggatgcaagtgcaaccca gagaaaggcagcaggggtcgtcctgggcctctcggtgaggttggtcagagcgggccagag ggagtccgcggccctgtggggggttcagggcccaaaggagagaagggccaccttggattt agaggaccatctgggcctaagggagacaagggacctatgggagtgcctgggttccaagga gctgatggagtacctggtcaccccggtcaggacggtggcagaggaccacctggactggac ggttgtaacgggaccagaggagaatcgggactgcctggctacgggacaggagaacctgga cccagtggtttccctgggccttttgggccaaaaggtcagaaaggagagcctcgattcatc tcaacagataacgagatcctgagtttaccgggtcctccaggcctgcacggtgcacctggt ctcagaggtcctgatggtcaaggtggtttgcctggtccaagagggcctgaaggatttgct ggcccacccggtcctcccggtcccccagggctgatggggagccgtagtgacggatatcaa ggagagagaggagacaagggcgacgtgggtcttccaggacccagtggtactcccggcgac gggtcgctaagaagcgaacaaacactcactatctacaaaggagatcagggtgaacctgga cgaaagggaagccgtggctaccctggcaaccctggccgacctgggcctttcggctaccgt ggtgaatatggagagaagggcattcctggatatcctgggggaagaggcgctccaggtttt aacggacctcctggttcaacgggacaacagggatatagaggtgatccaggttaccccggg caacaaggatacaatggacccaagggagaccagggagacaccggaccaccaggacctcct gcttacattaataattttggttcatctgttcaaggtgagccaggtagcccaggtctaaat ggactgcctggtgctcccggtgaccaaggatctccagggttcccagggccaccaggccga ccaggagttggttatggctcaagaggttttccaggggccccaggcccaaaaggagagaaa ggtaattcaggtgcacctgcctacggcgttgaaggaatcccaggcacccctggacttccc ggagcccccggccctcgtggacctgcaggcccaggaggtgcaggcttgtccattcccccc tgcgtcatctatcctgatggtggttcccagggcaccagttaccccggacagcctggtgca cctggtcccagaggaccgcagggtggctcaggattcaaaggcttcagaggggatccgggc gactgtgcctgtcgtggaggcggcttttcaggaggaccaggatcacctggtccccctggg gcggacggcacccctggcttccctggacgaaaaggtgaactcggtgactctggttcccct ggctttggcggtgttcagggacctcctggtcgtcctggtcctagtggcacctttggtcgt aaaggagaaaagggtgcgtcttactatcctaactatggtgcgggagtgaagggagagtct ggatctcctggacccagaggacctacaggtgaaactggaaaatctggcagagatggactg cctggcttccccggagcccctggactcccaggtgacgctggctacggcacagtcggggag aaaggtttcccaggattccccgggcaaaaaggtcgtcctggcggccctggagaacccggc caaggctttgtcggaacgcccggcttccgcggagagccgggagattctggactagcaggg ttgccagggcaaccaggtttacccggaccaagaggtgaaaacagctgtggaggggttaat ggcaccggagagggaacgggcacagtgttaccttgcaccatacctggtgaggaaggagca cctggttaccccggtggatctggaccaccaggtcctaaaggtcaggcaggtttcccagga ggttctggacgtccagggtttgatggtgccaagggagaaagaggagaccctggctttgga ggccagcctggaccacaaggtttccctggaccaagaggagatgctggaagtccaggtatt ccaggacagagttttgatggaggaaggggaaaggatggtgcggcaggacgtcctggagcc aaaggcctgcctggagatgtaattggagccacacctggaagtccaggacgggacggtttt ccgggagcccccggagacaagggtctgcctgggacaccaggaggccctggatcacctggt tttgacgggcgttccggtgttcctggactgaaaggagaacgtggactggacggttatcct ggtagtcccggccttcctggacctccaggtgagctgaccaatggatttcccggtcgacct ggagctcctggcgccaagggactcagcggatcaccaggctgccaaggttttcctggtaga aagggagaaagaggaaacccaggtttcccagcgcgtggtggtttgaagggagcccaagga ctacctggcatccctgggtcaccagggccagtgggaccaactggacctccaggcccacca accagagaaggaatcccaggaatcccaggaaggaagggtgagagaggtttcgctggactg atgggtttccctggactaccgggtcgtcctggtactccagggtttcctggagggaaggga gcttctggagggcccggaagagatggatttcctggcagtcctggattcaccggaccgaaa ggtgaccgcggataccctggcctcccaggcgtgcccgctccaattcttcctgtagagttt ttggagaaaggagacctcggcatcccgggaggcagcggccttcctggcttccctggaccc agaggtgacaaaggtttcccgggcctgcctggtcgtcagggtctgcctggacttcctggt ttctctgagcagagtaaaggacagccgggagtgcctggatacaatggacaaccaggaagc ccgggcttccccggaccgaagggagaacctggaatcatgggattccctggcatgtctgga ccgaggggtgatgatggctcacctggtttccctggcaaccctggagaagctggtcgtcct ggtggcaaaggtattcctggagactcttactcatatcctggaggtccaggacctaaaggt ctgacaggagatccaggcttctcaggtggtcccggcagagatggcgcccctggcgacaac ggctttccaggaagtccaggtttccctggatcaaagggaggtcctggtgaagcaggacgg cctggaataatgggctcccctggtttccccgggccaaagggtctgcctggctatcctgga agaaaaggacaagatgggtctcctggcctgcctggaggtcctgggggacctggatccaaa ggtttgtcgggagcccctggtttggatggacttaatggccttgggggacctaaaggactc cctgggaccccaggtgcaactggaggaggtctcccaggtgccaatggttttccaggggcg aagggagaaagaggagtttcctatgctggaggtcctggatatcctggagcgaagggagag agaggaaaccaaggtggtcctggactcccagggttccctggtcggcccggacctcctggt gagactgtgggctcagacattcctggacctataggagacccaggctaccccggactggat ggagaaagtggtttccagggtcctccaggtcctccaggaccacctggtccaggcacagcc cagggagacagaggtgactctgggctcccgggattccctggatcccctggcaggaaagga gaatcaggaatccccggaggctccggactgcctggcagccctggtttcaaaggagaacaa ggtgatagtggttacagcggaggtcctggtctcaaaggtttccctggtgactctggctac tatggactcaaaggacccaagggattaagaggtcgtcaaggtggtaaaggcccccccggc atcctactgaccaggccacttccaccctttgagcaaaaatacggagacatgggaactcct ggtgatagcggaggccctggtttccccggagagcccggccagtctggattgcccgggcgt ccaggtcctaagggtcgtcctggccctgcgggtaagctgggtaggactggctctgttggt ctgcccggaccagtcggtgacgccggagcccctggtttccctggacccagcggagaacaa ggtcgccccggttcaatcggtcgtgtcggtcctgccggcggtgtcggccgcagcttcagc atcggctacactctggtgaagcacagccagaactcccaggttcccatgtgtcctcagggc atggctcagctgtgggagggctacagcctgctgtacgtggaaggacaggagaaggcacac aaccaggaccttggtcagcccgggtcttgcctccccagattcagcaccatccccttcctc tactgctcccccaacgaggtctgctactacgccagccgcaacgacaaatcctattggctc tccacaaccgctcccattcccatgatgcctgtgtccgaggagcagatacagccttacatc agcaggtgttcagtgtgtgaggctccatctcaggctgtagcagtccacagtcaggacatg accatccccacatgcccggccggctggagaagtctctggataggatactccttcctcatg cacacagcggctggcgctgaaggtggcggtcagtccctggtgtctcccggctcctgcctg gaagatttccgcgcaacaccgttcatcgagtgcaacggcgctaaaggaacctgccactac tttgccaataagtacagcttctggctaaccaccgtggagcccggccaggagttccgctat tctccggggcaggagaccctgaaggaaggccaggagcgcttcagagtcagccgctgccaa gtctgcagcaagttcttgtag

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