Scomber japonicus (chub mackerel): 128383758
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Entry
128383758 CDS
T09718
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128383758 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128383758 (dhx15)
03009 Ribosome biogenesis [BR:
sjo03009
]
128383758 (dhx15)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128383758 (dhx15)
Spliceosome [BR:
sjo03041
]
Complex A
U2 snRNP components
U2 related factors
128383758 (dhx15)
Complex B
128383758 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
128383758 (dhx15)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
90S particles
Helicases
128383758 (dhx15)
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_25
Motif
Other DBs
NCBI-GeneID:
128383758
NCBI-ProteinID:
XP_053199321
LinkDB
All DBs
Position
22:11488624..11513519
Genome browser
AA seq
736 aa
AA seq
DB search
MMRRDCDRDRERDERSRDRDRDRDCVRDRVKSSGVPNNPIAGSGGFFKQMPFQQQINPFT
NLPHTPRYYEILKKRLQLPVWEYRERFTDILMRNQSFVLVGETGSGKTTQIPQWCVEMVR
SMPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTVLKYMTDG
MLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRPDLKVIVMSATLDAGK
FQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEGDEGDVLLFLTGQ
EEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPNKPNGAIGRKVVV
STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPG
KCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRA
LELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEVLSITAMLSVPQC
FVRPTEARKVADESKMRFAHIDGDHLTLLNVYHAFKQNHESNQWCYDNFVNYRSLMSADN
VRQQLSRIMERFNLPRRSTDFTSRDYYINIRRVLVTGFFMQVAHLERTGHYLTVKDNQVV
QLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVNIAPQYYEMGNFPQCEAKRQ
LERIIAKLSSKEYTQY
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcgtgactgcgaccgggacagagagcgtgatgagcggtcgagggaccgtgac
cgggacagggattgtgtccgtgacagggtgaagtcctccggggtgcccaacaacccaatc
gcaggcagtggaggcttctttaagcaaatgccctttcaacagcagatcaacccctttacc
aacctgccccacacaccacgctactatgagatcctcaagaagcgactgcagttacctgtc
tgggagtacagggagaggttcactgacatcttgatgcgtaaccagtcctttgtgctggta
ggagagaccggctctggaaagaccacccagatccctcagtggtgtgttgaaatggtgcgg
tcaatgccgggaccaaagagggcagtggcctgcacccagccccggagggtggcagccatg
agcgtcgcccagagggtggctgacgagatggatgtcatgttgggccaagaggtgggctac
tccatcaggtttgaggactgcagctctgccaagactgtgctcaagtacatgacagatgga
atgttgctgcgggaggccatgaacgatcccctgctggagcgctacggtgtcatcatcttg
gatgaggcccacgaacgcacattagccacagacatcctcatgggtgtcctcaaggaggtg
gtccgccagaggcctgacctcaaggtcattgtcatgagcgccacgctcgatgccggtaag
ttccaggtgtactttgacagctgcccattgctgactatccctggacgcacacaccccgtg
gagattttctacacgcccgaaccggagcgtgactacctcgaggccgccatccgcactgtg
atccagatccacatgtgtgagggagatgaaggggacgttctgctctttctcaccggacaa
gaggaaatcgacgaagcctgcaagcgaatcaagagggaggtggacgacctggggcctgaa
gtcggtgacatcaaaatcatcccactgtactcgacgctgcccccgcaacagcagcagagg
atctttgagccgcccccacctaataaaccaaatggcgccattggaaggaaggtcgtcgtg
tcaacaaacatcgcagagacgtccctgaccatcgacggcgtggtgtttgtaattgatccg
ggatttgccaagcaaaaggtgtataaccctcgtatcagagtggaatcgcttttggtgacg
gccatcagcaaagcctcagcccagcagagggcaggtcgcgccggacggacacgcccgggg
aaatgtttccgcctttacaccgagaaagcttacaagacagaaatgcaggacaacacatat
ccagagatcctgaggtctaatctgggctcagtggtgctgcagctgaagaagctgggtatt
gatgacctggtgcactttgacttcatggacccaccagccccagagaccctgatgcgagcc
ctggagttgctgaactacctggcggcgctcaatgacgacggtgacctgacggagctgggc
tccatgatggcagagttccccctggacccccagttggccaagatggtcatcgccagctgt
gaattcaactgttcgaacgaggtcctctccatcactgccatgttgtcagtcccacagtgc
ttcgtccgacccacggaggctaggaaggtggccgacgagtccaagatgcgcttcgcccac
atcgacggagaccacctgacgctgctcaacgtctaccacgccttcaaacaaaaccacgag
tccaatcagtggtgttatgacaactttgtcaactaccgctcactgatgtcagcggacaac
gtacggcagcagttgtccaggatcatggagcgcttcaacctgccgaggcggagcactgat
ttcaccagcagagactattacattaacatccgccgagtgctggtcaccggcttcttcatg
caggtcgctcaccttgaacgcaccggccattacttgactgtgaaggacaaccaagtcgta
cagctgcacccctccactgtgctggaccacaagcctgagtgggtgctctacaatgagttt
gtgctcaccaccaagaattacatccgcacatgcaccgacatcaaaccagagtggctggtg
aatattgccccgcagtactacgagatgggtaacttcccccagtgtgaagcaaagagacag
ttggagcgtatcattgcaaaactctcatccaaggaatacactcagtactaa
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