Scomber japonicus (chub mackerel): 128384264
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Entry
128384264 CDS
T09718
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128384264
Membrane trafficking [BR:
sjo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
128384264
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_10
SH3_1
TPR_8
TPR_7
SH3_9
DUF4042
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
128384264
NCBI-ProteinID:
XP_053199783
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Position
22:complement(3385092..3404456)
Genome browser
AA seq
1297 aa
AA seq
DB search
MAERSRRHSRIVRGFSRDASTLKRTLSAPEENFPTALPMLLDVVRGPQRLPADEESQEML
RGKLHILQADSSEVNSLFMELSAHLVSINSEDKVIYVTFKTFEEIWKFTTYYTAGFLGHC
IENLLLDQKFWLTSLEEDIAIEVSIQEDTLNLLYKGILMQDGSLFASCIANQMFDSSTSG
GDLYLEQGDIAQFEPPFLGSGWTVLCLADGNRGTAPNPVLEPVIPFHQWFLKSCAESILV
GDGKPACDFPLQCARGTCVAAVEYDAEGPDELSVASGDRIIIVGLLVSCFDWFTGRKEVT
GEVGLVKTNVVKPSSNTYSSADICLDREEGFFCLQESKIIKETTALLKKKSQNDTGHNYK
LDILGCKYSETKVPNSSSSKVDTHLKTNIQRILDQGKESSPDSGATMNGIEEESAVPTEA
KKPYPPCFTVHPVAEGNNNTENFIPLFSFLEGQDYKLEFGTLYEQSPELLNSSTFSGHSD
EDELIAFLGVARETARKKRLFWLQTRLCFLLGKLCAGRLKFSQARVYFEEALSVPRESFT
DLRLLASIYSNLAVIYVLQKNTESFFAVAERLVALLMGIPDCLESIEDNPVLKYMLKKAV
LCHNRMAEARACYLLAKHHLTRTEGAQAVPYLERLVVVCAEADKTWTISTSQGYLTLGRL
YSELCLPHLSVSSARRASQQSSATLTDCLSSMVLVLDNVNRLYGITEQEAFFPAHVAPYL
HQAISFPMVQGGGSDQYHLLSYQLTVCLCQLFNKQRMIGHAIRHLHALINNSPSSRLPTS
VLERNSALIWLAWLHIDNNQSVVALDILDAVLASMPEHCTTPQEGVVLNMRGVALRCMGD
LRRAAESYEAAVDICQEYEDMPNWAVAQANLGLLCLKAGAKGLAQRHLTEAVQLFSELDE
EGHEVNFITVLLELGQHYVKQQQLDYGKGCYEWALLLAINANVLDCQLTATKHLCHLYGC
ESPDQAQCIIYSQHQIQLLSSTGDRGQEGDALEAVSQLYLSLGTDRAHRAALDYTKSSLG
IFIDLGFREKEAYGWLHAGKIYHLLGQTELVDLYVQVAQDVALSTGDTKFILKLLEAAGD
IFFNSCQDRDKAITFYRDRALPIAVKSSSVKTKLRLCNKLTELMLNLKLYGEAVEFAHTA
LDISITLGERLNERVAYHRLASLYHCLEQYEMAEHHYLKTLTLCPTPLQFDEETLYYVRV
YLTLGDIIFYDLKDPFDAAGYYHLALAAAIDLGNKKSQLQLCTRLATIYHNFLKDRELSL
FFYQKARAFAAELNVKRINISPDQLYGSSPQCKTTGQ
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagaagccgccgccacagcagaatagtgcgtggtttctccagagatgcttca
actctgaagagaactctgtcagcaccagaggagaacttcccaacagctctgcccatgctg
ctggatgtggtcaggggtccacagcgtcttcctgcagatgaggagtcacaggaaatgttg
agagggaagctgcacattctgcaggctgacagcagcgaggtcaacagtctattcatggag
ttgtctgctcatcttgtctccatcaacagtgaagacaaagtgatatatgtgacttttaaa
acatttgaggaaatatggaagttcaccacatattatacagcaggattcttgggtcactgc
atagagaatctgttgttagaccaaaagttctggctcacttctttggaagaagacattgct
attgaggtttctattcaggaggacacactgaaccttctctacaaaggcatcctcatgcaa
gatggttcattgtttgctagttgtattgccaaccagatgtttgacagctccacctctggc
ggagacctgtacctggagcagggagacatagctcagtttgagcctcccttcctgggctca
ggctggaccgtcttatgcctggctgatggaaaccggggaactgcacccaaccctgtactg
gaaccagttatcccttttcatcaatggtttcttaaatcttgtgcagagagcattttagtt
ggtgatgggaaacctgcttgtgacttccctctgcagtgtgccagaggaacttgtgtggcc
gctgtggagtatgatgctgagggtccagatgagctgagtgtggcatccggtgatcgtatc
atcatcgtgggacttctggtgtcttgttttgattggttcacagggaggaaggaggtaaca
ggagaagtgggtctggtcaagacaaacgtggtgaaaccctccagtaacacctacagttca
gcagatatttgtttggatagagaggaagggttcttctgtctgcaagagagcaaaatcata
aaggaaacaactgccttattgaagaagaaatcccaaaatgatactggtcataactacaaa
ctagatatcctcggttgcaaatactctgaaacaaaagtgccaaacagttcttcaagcaaa
gttgatactcacttgaaaactaatatccagaggattcttgaccaaggaaaagaatcctcc
ccagattctggtgcgactatgaatgggattgaagaagaatcagctgtgcctactgaggcc
aaaaaaccctaccctccctgcttcactgttcacccagttgcagaagggaacaacaacaca
gagaacttcattcccctcttctcttttttggaaggacaagattacaaactggagtttggc
actctgtatgaacagagtcctgaactcctcaactcctccaccttcagtggtcactctgat
gaggatgagctgattgcctttcttggtgttgcgagggaaactgccagaaagaagcgactc
ttttggttacagactcgtttgtgcttcctgttgggtaagctctgtgctgggaggttaaaa
tttagccaggctcgggtttactttgaagaagccctcagtgttccacgtgaaagcttcacg
gacctcaggctgttggctagcatctattccaacctggctgtcatatatgttttgcagaaa
aatacagaaagtttctttgctgtagcggagcggcttgttgccttgttaatgggcatccca
gactgtctggaaagcatagaggataatcctgttctcaagtacatgctcaagaaagctgtt
ctatgtcacaacagaatggctgaagccagggcttgttatctactggcgaagcaccacttg
actcgaactgagggtgcccaggctgttccttatcttgagagactagttgttgtttgtgct
gaagcggacaaaacatggaccatctccaccagccaaggatacctgaccctgggaaggctc
tacagcgaactttgccttccccacctcagtgtcagttcagccaggagagcttctcagcag
tcctctgctacactgactgactgcctcagcagcatggtactagttctggacaatgtcaac
agattgtatgggatcacagaacaggaagccttcttcccggctcatgtggctccatattta
caccaagccatctcttttcccatggtccaaggaggaggaagtgaccaataccatttgttg
agctatcagcttactgtttgtctctgccagctgtttaacaagcagagaatgattggacac
gctatccgacacttgcacgctcttatcaacaacagtccatcctcacgactccccacttct
gtcctggagagaaacagtgccctcatctggctagcatggcttcacattgacaacaaccag
tcagttgttgccctagatatcttggatgctgtcctagcttccatgccagaacactgcacc
acacctcaggaaggtgtggtcctcaacatgcgtggcgttgcccttcgatgcatgggtgac
ctccggagggcagcagagagctacgaagctgctgttgacatctgccaagagtatgaggac
atgccaaactgggctgtagctcaggctaatctagggctgctgtgtctgaaagctggagct
aaaggactagcacagaggcacctgactgaggctgtgcaactattctctgagctggatgaa
gaaggtcatgaggtgaacttcatcacagtgcttctggagctggggcagcactatgtgaag
cagcagcagctggactatgggaaaggatgctatgagtgggcactgctgttggctatcaat
gccaatgttttagactgccagctcactgcaaccaaacatctgtgccatctgtacgggtgt
gagagtccagaccaggcccagtgtatcatctacagccagcaccagatccagctgctcagt
agcacaggagacagaggacaggagggggatgcactggaagctgttagccagctctatctc
agtctgggcacagacagggcacaccgggcagctctcgactacaccaagagcagtctgggt
attttcattgacctgggcttcagggagaaggaggcgtacggctggctgcatgctgggaag
atctaccacctgctgggccagactgagctggtggatctttatgtacaggtagctcaggat
gtcgctctgagcacaggagacaccaagttcatcctgaagcttctggaagccgcaggagac
attttcttcaacagctgccaggatcgcgacaaggctatcaccttctacagggaccgtgct
ctgcccatcgcagtgaagagcagcagtgttaaaaccaagctgaggttgtgtaataagttg
actgaactgatgctcaatctgaaactctatggggaagctgtggaatttgctcacactgca
ctggacatcagcatcactctaggtgagagactgaatgagcgagtggcctaccaccgctta
gcctctctgtaccactgtctggaacagtatgaaatggctgaacaccattacctgaagact
ctgacactctgtccaacacctctgcagtttgatgaggaaacactgtactatgtcagggtg
tatctgacactgggggacatcattttctatgatctgaaggacccatttgatgcagcagga
tattaccacctggcactagctgcagccattgatctgggcaacaagaagtctcagctgcag
ctgtgcacccgccttgccaccatctaccacaacttcctgaaggacagagagctctctctc
ttcttttaccagaaggcgagagcattcgctgcagagctgaacgtgaagaggattaatatc
tcaccagatcagctgtatggcagcagcccacaatgcaagaccacgggacaataa
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