Scomber japonicus (chub mackerel): 128384387
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Entry
128384387 CDS
T09718
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo02010
ABC transporters
sjo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128384387
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128384387
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sjo02000
]
128384387
Transporters [BR:
sjo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128384387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
128384387
NCBI-ProteinID:
XP_053199909
LinkDB
All DBs
Position
22:13132750..13269092
Genome browser
AA seq
2248 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKIRLVVEVIWPLFLFFILVWVRSSNKPIFKGQCHYPNKA
MPSAGVLPWLQGMICNIDNPCLEYPTPGETPGQVNNFNNSVISGMLIELQNLLVNRSILS
KVQLLADDVDKWASVLSQSNPGNGQPVILRSILRDNETFSAHLKENLAVPPAVIQSLLAA
QIYVNPMTGILRPGELRSILCEGTGLDQYIQFSSQAEKEAFQNVSCSLTPQQLINTQQVL
QQNLDPRKVLSELPSTLGLDATDTVTLIGKTTADAAPVIREVARLQSSTIFKAASSLDFR
EDMIGSINMLLCGKKPDFNSTNITLSLPSSRQTANNQSASIMNNGSDPFCQALVDTLEST
PGLRYIWSTFRPLLQGKVLYTPDTPAARLMVEEANSTFNALAMLKELADSWDELGPRVWD
FFQNSTQVNTLRALLASPLFAAALNERLSGTGWTAELLANFLYNGPPEDRPAGMPPNDWR
DVYNSTTQILKLLSKFLGCLDLNKFEAAANESHLVTRALELLENDTYWAGIIFENLQPDS
SQPPPYVKYTIRMDVDEVERTNTVKDRSWSPGAGDNSFNDLRYIWGGFAYLQDMMDHGII
RTQTSKNQTLGVFAQQMPYPCFVDDAFISSIGGILPMFLVLAFMYTVCMTIKGLVYEKEL
RLKEVLRAAGIQNGALWSSRFIENIVLLTVPCLLMSIMVKYGKVLQYSDPTVIFVFLLVF
CVATITQCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVMGFGAKVAVSLLSCV
AFGYGCENFAKYEEQGIGIQWSNIGKSPEEGERYTFIVSIIMMLFDAVFYWILTWYIENV
FPGQYGIPKPWYFPFTASYWCGTASVTDVDPGLLKDSSAHNEYLEKTPPNVKAGVSIRNL
VKIYKTGKKLAVDGLSVDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGLDI
HTDMDSIRKYLGMCPQHNVLFNELTVEEHIYFYARLKGCTRDEVKIEMDQMIKDVGLPHK
RKDLAKNLSGGMQRKLSVAIAFAGGSKIVILDEPTAGVDPYARRGIWELLLKYKQGRTII
LSTHHMDEADILGDRIAIISQGKMRCCGSSLFLKKCFGSGYYLTLVRDGIEKMTAQRNGI
IHNQETEEKDRPSRSSSPDDGIGSQSWVYSDPSDLTAVGQLVRRHVPQAVFLENIGQEIT
YILPYGGARDGTFALLFHELDLALADLGLTSYGISDTTLEEIFLKVAEDTGVDAEISTTK
ELLVRDCKRSSRESKRNSITSVQTKTEISGLSDLKEKFTSKVGDFKRNTSVNGRGSAVIT
GWELIRRQFLALFIKRFHHARRSRKGLIAQVVLPAVFVCLSLIFSLIVPPFAEYPSLELQ
PWMYGLPQTTFYSNDGPDNVEVSQVVETLVNNPGFGTRCMTGDPIPKLPCTSSRSDWFTP
PVDQSVIDIFLNGNWSMSNPSPSCQCSTPKRTIMLPDCPLGAGGLPPPQRIQNTTDTLLN
LTGRNMSDILIKTFEHSGKTRYGGISVGGVNSQVRLTEAGIEAAFRDLKDLFSSSQDNVT
DQIIQNAETLLKKLGTRDNVKVWFYNRAWHGMVSFLSVANNAILRGNLPAGQDPRQYGIS
VSNHPLNLTKQQLSYVAMATTSTDVVVSICVIFAMSFIPASFVLFLIQERVNKAKHLQFV
SGVNPAVYWMANFVWDMCNYIIPCLIVIVIFLCFQQKSYVSPPNLPALVLLLLLYGFAIT
PMMYPASFIFSVPSTAYVVLTCINLFIGINGSVATFVMELFDDDNVSHINNIVKQVLLIF
PHFCLGRGLIDMAKNQAMATLFSSFGEDRFKDPLSWEMVGKNLCAMAIQGVVMFAVTILI
QYKFFCKPRLISAKSLSAEEEDIDVARERERVYEGRTQNDLLRICDLTKVYPRKSTPAVD
RLCVGVPAAECFGLLGINGAGKTTTFKMLTGDIPVSGGEAFLNGYSIRTEMRDVHQNLGY
CPQFDALDDLLTGREHLEFYARLRGVPEKEVTMVAEWGVQKLGLVKYSNKSAGTYSGGNK
RKLSTAMALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEAL
CTRMAIMVNGRFKCLGSIQHLKSRFGDGYTVIVRVGGSPPDLKPVEDFVQLTFPGSTLTE
KHHNTLKYQFPYAQGALANIFSHFTSHQQGLGVEDYSVSQTTLDQVFVNFARLQHGEEDS
QAYDNPVDTSDEVPMQSVRTSTEVSERL
NT seq
6747 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagttcactctgctcctgtggaagaacttcactctccggaagaga
caaaagattcgattggtggttgaagtgatctggcctctgttcctcttcttcatactggtg
tgggtgcggtcctcaaacaaaccaattttcaaaggccaatgtcactaccccaataaagcc
atgccgtccgctggcgtgctgccctggcttcaaggtatgatttgtaacatcgacaatccc
tgtttggaatatccaacgccaggggagacaccaggccaagtcaacaacttcaacaactct
gtaatttctgggatgttgattgagctacaaaacctcctggtaaacagatctattctcagc
aaggtgcaattactggcagatgatgtcgacaagtgggcttcagtcctgtcacagtctaac
cctggtaatggtcaaccagtgatcctgaggagtatcctaagagacaatgaaacattctcc
gcacatctgaaagagaatttggcggtgccaccagcagtgatccaaagcctcctcgctgct
cagatttatgtcaatccaatgacaggcatcctgagaccaggtgaactgaggagcatcctg
tgtgaggggacaggtctggatcagtacatccaatttagcagccaagctgaaaaggaggct
tttcaaaatgtcagctgctccctcactccacagcagctgattaacacccagcaagtactc
cagcaaaacctggacccgaggaaagtgctttccgagctaccttcaactttgggtctggat
gcgactgacacagtgacactgattgggaaaactactgcagatgcagcaccagtgattcgt
gaggtggccaggttgcagagctccacgatctttaaggctgctagttcattggatttccga
gaggacatgattggcagcatcaatatgctactgtgtggaaagaagcctgacttcaattcc
actaatataaccctgagtttaccctcatctagacagacagctaacaaccagtcagcctcc
attatgaacaacggttccgatcctttttgtcaagctctcgtcgacaccctggagagcaca
cctggtttgcgctacatttggagcaccttcaggccgttactgcaagggaaagtcctctac
acacctgatacacctgctgctcgcctcatggtggaagaggcaaacagcactttcaatgct
ttggctatgttaaaagaactggccgactcatgggacgaacttgggccacgcgtctgggat
ttctttcagaatagtacccaagtcaatacattacgggctttgctggcgagtccactgttt
gctgctgccctcaacgagcgtctcagcggcacaggatggacagcagagctgctggccaac
ttcctgtacaacgggcctccagaggatcgtccagccggcatgccgcccaatgactggcgg
gatgtttacaacagcactacccaaatcctgaagcttctctccaagttccttggttgttta
gacctgaacaagtttgaggcagctgccaatgaaagccatctggtgaccagagcattggaa
cttctggagaatgatacgtactgggctggcattatctttgaaaacctccagccagactcc
agccagccacctccttatgtcaagtacacaatccgcatggacgtcgatgaggtagaacgc
accaacacagtgaaagacaggtcatggtctcctggggccggagacaattcctttaacgac
ctgcgctatatatggggaggctttgcctacctgcaggatatgatggaccacggcattata
cgaacacaaacgtcaaagaaccaaacgcttggtgtttttgcccagcaaatgccatacccc
tgctttgtggatgacgctttcatctcaagtattggaggcatcctccccatgttcctggtt
ctggccttcatgtacactgtgtgtatgaccatcaaaggcctggtgtatgagaaggagttg
cggctcaaggaagtgctgcgtgctgctggcattcaaaacggtgccctttggtcttcaagg
ttcatagagaacattgttctgctcacagttccgtgtttgctcatgagtatcatggttaag
tacggcaaagtcctgcaatatagcgaccccacggtaatctttgtcttcctgctggtgttc
tgcgtggccaccatcactcagtgcttcttcattagcgtcttcttctctaaggccaactta
gcggccgcgtgcggtggcctcatctactttgtcctctacctgccacacatcctttgctac
gcctggagggacgtcatgggtttcggggccaaggttgctgtgagtttattgtcatgcgtg
gctttcggctacggctgtgagaactttgccaagtacgaggagcaaggcatcggtattcag
tggtccaacattggcaagagtccagaagagggggagcgctacaccttcattgtgtccatc
atcatgatgctgtttgatgctgtcttctactggattctcacctggtacattgaaaacgtc
tttccaggccaatatggaatccctaagccatggtacttccctttcactgcatcttattgg
tgtgggacggcctctgtgactgacgttgacccaggtttgctgaaggattccagtgcacat
aatgaatatctggagaagacgccacctaatgtgaaagccggggtctcgatccgcaatctt
gtcaaaatctacaagactgggaagaaacttgccgtggacggcctgagtgttgacttttat
gaaaatcagatcacatcttttcttggccacaacggagctggaaaaacaaccacaatgtca
attctaacaggactcttcccgcccacatctggaaccgccctcatcaacggacttgacatc
cacaccgacatggacagcattcggaagtatttgggaatgtgcccacagcacaatgtctta
ttcaatgagctgacagtggaggagcacatctacttctacgccaggctgaaaggatgcacc
cgtgacgaagtgaaaatcgaaatggaccagatgattaaggatgttggtttaccacataag
cgcaaggatcttgcgaagaacctgtcaggtggaatgcagaggaagctgtccgtggctata
gcatttgccggcggatcaaaaattgtcatcttagatgaacctacagcaggagtggacccc
tatgcccgcaggggtatctgggaactgctgttaaagtacaaacaaggtcgcaccatcatt
ttgtctacacaccacatggacgaggcagacatcttaggtgatcgtattgccatcatctcc
caaggcaaaatgcgctgctgcggctcctcccttttcctgaagaagtgttttggaagcggc
tactacctcactctggtcagagatgggattgaaaagatgacagctcagcgtaatggtatc
atacacaatcaggaaacagaggaaaaagatcgtccttcgaggagcagcagcccagatgac
ggcattggcagccaaagctgggtctactctgatccctcagatttgacagcagtgggtcaa
cttgtgcggcgccatgtccctcaggctgtcttcttggagaacatcggtcaggagatcacc
tacatactgccctatggaggagccagagatgggacctttgcccttctcttccacgaactt
gacctggccctagctgacctcggcctgaccagctacggcatctctgacacgacactggag
gagatattccttaaagtggcagaagatactggcgtggatgcagagatttcaacaacaaag
gagctgttggtgagagactgcaaaaggagctctcgcgaatccaagcggaacagcatcacc
agcgtccagacgaaaacagaaatctctggattgagtgatttaaaagaaaagttcaccagt
aaagtgggagactttaagaggaacaccagtgtcaatgggaggggatctgcggtcatcact
ggatgggagctgatcaggaggcagttcctggcgctctttatcaagcgcttccatcacgcc
cgcaggagccgcaagggactcattgcccaggtggtcctgcctgctgttttcgtgtgcctg
tctctgatcttctcactcatcgttccaccatttgccgaatatccaagtctggagctacaa
ccctggatgtatggtctccctcaaactaccttttacagcaacgatgggccggataatgtg
gaggtgtcccaagtggtagaaaccttggtgaacaaccctggttttgggactcgctgcatg
actggagatccaataccgaagttgccgtgtacctccagcaggtctgattggttcactcca
cccgtggaccagtcagtgattgacatcttcctcaacggaaattggagcatgtcaaacccc
tccccctcctgtcagtgcagcactcctaaacgaacaatcatgttacccgactgtccgctc
ggcgctggagggctccctccacctcagaggatccagaacacaacagacacactgctgaat
ttaactggacggaatatgtcagacatcttgatcaagacatttgagcactcaggaaaaaca
aggtatggagggatctctgtcggaggagtcaactcccaggtccgtctgactgaagcagga
atcgaagctgcattcagggatctaaaagacctattcagttcatctcaggataatgtgact
gatcagatcatccagaatgctgagacgctgctgaagaagctgggaaccagggacaacgta
aaggtgtggttctacaaccgggcttggcacggcatggtgtccttcctcagtgtggccaac
aacgccatcctgagaggaaatctgccagcaggacaggatccccgccagtatggcatctct
gtctccaatcaccccctcaacctcaccaagcagcaactctcctatgtggccatggccaca
acctcgactgacgtggtggtgtccatctgcgttatctttgccatgtccttcatccctgcc
agctttgtcctcttcctcatccaagagagggtgaacaaagccaagcatctgcaatttgtc
agtggagtaaacccagctgtctactggatggctaattttgtctgggacatgtgcaactac
atcatcccatgcttgattgtgattgtgatcttcctctgcttccaacaaaaatcctacgtt
tctccacctaacctgcctgctttggtcctcctcctacttttgtatgggtttgccatcact
cccatgatgtaccccgcctccttcatcttcagcgtgcccagcacagcctatgtggtgctg
acctgtataaacctcttcattggtattaacggcagcgtggccaccttcgttatggagcta
ttcgatgatgataatgtctcccacatcaacaacatagtgaagcaggtgctgctgatattc
ccgcatttctgtctgggccgagggctgattgacatggccaagaaccaggcgatggccaca
ctcttcagcagttttggggaggaccgattcaaggacccgcttagctgggagatggtggga
aagaacctttgtgccatggccattcagggagttgtcatgtttgccgtcacaatcctcatt
cagtataaattcttctgcaaaccaaggcttatttcagcaaagtcattatctgcggaggaa
gaggatatcgatgttgctcgggaacgtgagcgggtgtatgagggcaggacccagaacgac
cttctgaggatctgtgatctgactaaggtataccctcggaagagcacccctgctgtggac
aggctatgtgtgggcgtacctgccgcagagtgtttcggcttattgggaatcaacggggct
gggaaaaccaccacgttcaaaatgctgacaggagacatcccagtctccggtggagaggcc
ttcctaaatggatacagcatacgcacagaaatgagagacgtgcaccagaacctgggctat
tgtccccagtttgatgctcttgatgatctgctgaccggacgagagcatctggagttttat
gccaggttacgaggggttccagaaaaagaggtcaccatggtggcagagtggggggtccag
aagttggggctggtcaaatattccaacaagtcagcaggtacatacagcggcgggaacaaa
cgaaagctttccacagcaatggccttgatcggctgtcctcctgtcatcttcctggatgaa
ccaaccactggcatggaccccaaagcccgtcgcttcctatgggactgcatcctgagtgtc
atcaaagagggacgctctgtcattctcacgtcacacagtatggaggagtgtgaagcactg
tgcactcgcatggccatcatggtaaatgggcgcttcaagtgtctagggagcatccagcat
ctgaagagcaggttcggtgatggctacacagtgattgtaagagttggtggctctcctcct
gacttgaagccggttgaggactttgtccagctgaccttcccgggcagcaccttgacggag
aagcatcacaacacactgaaatatcagttcccatacgcacagggagctttggccaacatc
ttcagccacttcaccagccatcaacaagggctgggcgtggaggattactctgtgtcccag
accactctggatcaggtctttgtgaatttcgcaaggctccagcacggggaggaggactct
caggcctatgacaacccggtggacacctcagatgaagtgccaatgcagtctgtaaggacc
tccacagaagtgtcagagagattgtaa
DBGET
integrated database retrieval system
