Scomber japonicus (chub mackerel): 128385134
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Entry
128385134 CDS
T09718
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sjo03016
]
128385134 (rtcb)
Enzymes [BR:
sjo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128385134 (rtcb)
Transfer RNA biogenesis [BR:
sjo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128385134 (rtcb)
Prokaryotic type
tRNA splicing ligases
128385134 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128385134
NCBI-ProteinID:
XP_053199970
LinkDB
All DBs
Position
23:24814117..24826151
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKINSNCWRIKKGFVPNMQVEGIFYVNDSLEKLMFEELRNASRGGGFG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDIDDPDAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARINS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggagttacaatgatgagctgcagtatctggataaaatcaacagtaactgctgg
aggattaaaaaaggcttcgttcccaacatgcaggttgaaggaatcttctacgtcaatgat
tctctggagaaactgatgtttgaggagcttcgtaacgccagcagaggaggaggttttggt
ggattccttccggccatgaaacaaatcggaaacgtggcggctcttccggggatcatacat
aggtccatcgggcttcctgatgttcactctggatacggcttcgctatcgggaacatggcc
gccttcgacatcgacgaccccgatgccgtcgtctctccgggtggagtgggttttgatata
aactgtggcgtgcgtctgctgaggacgaacctggacgagcgagacgttcagccggtgaag
gagcagctggcccagtcgctgtttgatcacatcccggtgggagtcgggtccaaaggagtc
atccccatgggagccaaggatctggaggaggctctggagatgggggttgactggtctctg
agggaaggctacgcttgggccgaggacaaggagcactgtgaggagtacggcaggatgctg
caggccgaccccaacaaagtctcctccaaggccaagaagagaggccttcctcagctggga
actctgggagcaggaaaccactacgctgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgatcacaaaggtcaggtgtgtgtgatgatccacagc
ggcagcagagggctcggtcatcaggtcgccacagacgccctggttgccatggagaaggcc
atgaaaagagacaagatcatagtgaacgaccgtcagctggcgtgcgctcgcatcaactct
caggagggtcaggactatctgaaggggatggcagccgcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttctctaaagtgttcggtacgacgcca
gacgacctggacatgcacgttatctacgatgtctcgcacaacatcgccaaagtggaggag
cacatggtggacgggaagcagaagactctcctgattcaccgcaaaggctccaccagagct
ttccctccgcaccacccgctcatccccgtcgactaccagctcacaggtcagccggtgctc
atcggaggaacgatgggaacctgcagctacgtcctcacaggaaccgaacaaggcatgacg
gaaacattcggcaccacgtgtcacggagcgggtcgcgctctgtcccgagcaaagtcccgc
aggaacttggacttccaggacgttctggacaaactggcggaccaaggaatcgccatcaga
gtggcttcacccaaactcgtcatggaggaggctcccgaatcgtataaaaacgtgacggat
gtcgtgaacacgtgtcacgacgcaggaatcagcaagaaagcgatcaaactgaggccgatc
gctgtgattaaaggctga
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