Scomber japonicus (chub mackerel): 128385181
Help
Entry
128385181 CDS
T09718
Symbol
lsm8
Name
(RefSeq) LOW QUALITY PROTEIN: LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128385181 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
128385181 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128385181 (lsm8)
03041 Spliceosome [BR:
sjo03041
]
128385181 (lsm8)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128385181 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
128385181 (lsm8)
Spliceosome [BR:
sjo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128385181 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
128385181
NCBI-ProteinID:
XP_053200018
LinkDB
All DBs
Position
23:23667855..23670943
Genome browser
AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGXEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcgctggagagctacatcaaccgtactgtggccatagtcacatcagacggc
aggatgatcgtgggcactctgaagggcttcgatcagaccatcaacctgatcctggacgag
agccacgagcgagtgttcagctccagtcaggggntggagcaggtggtgctgggactctac
atcgtcaggggcgacaacgtggccgtgatcggggagattgatgaggagacagactctact
ctggatttggggaacatcagagccgagccgctcaactctgttgttcactga
DBGET
integrated database retrieval system
