Scomber japonicus (chub mackerel): 128385258
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Entry
128385258 CDS
T09718
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128385258 (utp20)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
128385258 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HOOK_N_NuMA
Motif
Other DBs
NCBI-GeneID:
128385258
NCBI-ProteinID:
XP_053200089
LinkDB
All DBs
Position
23:complement(8771849..8791631)
Genome browser
AA seq
2827 aa
AA seq
DB search
MKIKSKSSYHKSENTFRFLTFAERLANVNIDVIHRIDRTGSYAEEVETYFSEGLTKWRDL
NLTEHFTTFLKEVSNKTQSFNMMVFHQKSIVETLKTHLAVKDSLAYQPLLDLVVQLARDL
QTDFYPHFPDFFLLITSLLDTKDTEVLEWAFTCLSYLYKYLWRLMVKDMTNIYSLYSTLL
AHKKEHIRKFAAESFSFLMRKVPDLDALLTHVFSDLQQHPDKAEGTGQLLFEMCKGVRNM
FHSCAATALPVALRKLGPTADQEVSLPWDTVRDSLDHMGQAAANHVEKEHFLVLWESLQV
RVVEVLGVMEAKGEEAEQATEQLERLLFIFHTLVSHRDGAKVTKPEAVCQTVLRLVQSSA
LSTSCSRLLLQIISSLLLGENISLPKALIQETVQKVFGSTMGQDLILEFTKEMFTMKHFE
QLFLPSLLRFTTGLFGCGDPLSRHQGLEVLVSLILAKAPPPTDGSMAFETYPLLFTGQTT
GVFSIKEAGQASREQLAVPELVLSLIKLPEEQNQPITDLSLLWASLVLLPHLRPLVPASI
VPAVTAFLNHLLCEIETENLGKAGLFVATQALSCLLTLDGSAQLLSLVTVDKISSMLRKF
PSDLSALLLGDLYYTRLSLSGVSEHLSHSALLELYQILHTNLSSNISKIRLLTLRILSHF
EADLPPQIEGEENVEVQPVFAVCLQAELVPASVQDYREKLLHLRKLRHDLVQRSLPQGPQ
GTFQQVPLRYLIAMLFVNFRPLWDAVIELVVTHARGMDNKDFWKVYHEHLEMVAGIAEKE
LQEYDEEDDDDESGESDLHGEPGCDVIESGDMGVLFLQQLKSSFNPNERTDFPNFRSLLW
RAMAQFPERVEPRSRELSPLLLRFIRNEFYPADLQVAPTQDLRKRNDATLEESEMAGEEE
EEKEEKEEEEPEEEVRQQRKAPPRRAAAKQLIAHLKVFAKFTNPRSLCLESSLSELYNQL
LCHQDHQIQRVALECILTYKDSNIVPYKENLERLLDDKHFKEEIVHFNISEETEVIDASH
RAKLIPVLMRILFGRLRTKSGSKFQGKASAATRSSIILRFLAGCHAEELGMFIDLLLEPV
CHHSEGSCLTAVERAIAETNVGAVLPLGRQHSLLNVIHVVIQKLGHLIQIYLPKVLQILL
CVTASVSTILDSRDQLRAGCISPLKNLRRLGILRIQDFFDGFDCYSFSPDELDAVFQAVV
WPQVCRLPTESPYSPTPLLKLIHVWCKNPRFFPLLAKQRPDHPECGVLLNVFALLFAKKA
SPVTIAMVMDIAESLATTEDFVASENETELSVNSSVFPQPKEGALITADSITQGSRLLLP
HISTLLQYLSSVVRNTDRLKKKKFRAQVAKELNILSKVSRFVSDKEQSSVLISLLLPYLQ
KGHNPQETEIDILATIQNLLRQCVQPSAFLRPLSKLFSIIHNKLPRRALINVFQTLSDLE
PSLTYITDVTTKLNALDSRHLDEIHFDVRLTAFQEATRRINDMQTLDLDFIVAIIHNCFH
TYEIGDMSLGDNATLCLSAVITQVAAVGAGEQMYKDIVQHTILDAVHKGLRNKTESVQHE
YTCVLACLVKTFPSRKEFRDLVQLTDYNDPESDFFEHMKHIQIHRRGRALRKLAKQLTEG
TVVMTPRSLQNYIMPYAMTILLDEKMLKHENMTSASVEVVGAVCRRLTWSKYLYYLKHFV
HILQTGQAEQKLAVSLLVTVLDAFHFDHQTLSKEMEAAKAREGGSVKMDAGDEAEDAPEE
SDASDDEEPMEVDSKAATSDVPMETDTTDKEKDGVSKEAATTKTEKPPAPKPVVVPSGLP
QSKEELETLIKAIHQTVNDSVLPRLQRCLTAKVKRDEEHKAVKSKEVKDEEVARVPIAFA
MVKLMQTLPPNIMETNLPGILIKVCVLLRNRFQEIRDVARGTLVKILETLGCKYLQYLLK
EMQGILVKGYQVHVLTFTVYQLISVLTPTLKSGDLDPSMNMLIDIFNNELFGAVAAEKEV
KGIVSKLMEARHSKSMDSYELLAHFCSKESITKLILPLKEILETSSSLKVCNRVAAVLRR
LVLGLLVNDGMTSQDILLLSHGLVSESLPLLTKRDREKASAKSPLDPRLPPPSCLLLPPT
PKRGGKKAPVSSRTNMHILVDSGLKLLHLSLKKAKVTSSEKSSLEMLDPFVLLLLDCLNS
MHVKVTTEALVAFTWLLKFPLPAVEQNADQLTKQLFVLLKDYSKAGAARGENYQLVQNCF
KAITILVKNVKSNKISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLIVPEMEQL
MKKVAKLSVNGSNAMIRIHCRQIYLKYLLDYPLGKKLREHLDFIMAQLAYEHDTGRESVL
EMLAFIFQTFPKNLLQQHNGLFFAPLALVVINDDSPRCKKMAAMAIKALLAQLDLNTQNT
LFSLVNTWMNADKVSLRRLGAQVCGLFVEVDEEKFTRRLDDLLPLLEKGIDPDNFDDIEE
EQDEKEADRLLFSYLTLITKLSKHCGLLELSKPSDTLCRIWGHIEAHLRYPHCWVWLTAS
QLFGQLFAAQQAEQLVAMWSEEGGSNSPQQAATAFIIKGLDKKMRELALSFCHQLQSKFL
DTASGEQVIKNLLFVGKVIYLISPECDVTPPQEEAKEKEEEEQMEDKNGDGEEGVDGDEQ
KDEEKEKEDEEDDKDDRPPSLLWLMKKLVLMAKREAAYTPKVPLKRTCVFKFLGAIAMDL
GKERVGPYLTTVITPLYRELDSTYADQDPTLKNLAQELIELLKKQVGLEKFSLAFSSVQK
EFSVRRAARKRQRAMQAVANPDIAAKKKLKKHKNKIEAKKRKIEFLRPGYKAKKHRSHAL
KDLAMVQ
NT seq
8484 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaaatccaagtcttcgtatcacaaatctgagaacaccttcaggtttctcact
tttgctgagagacttgccaatgtcaacatcgatgtcatccaccgtattgacaggactgga
tcatatgcagaggaagtagaaacatacttctctgaaggactgacaaaatggagagacctc
aacttgacagaacatttcactacctttttgaaagaggtttccaacaagacccagtcattc
aacatgatggttttccaccagaagtcgatagtggagaccctaaaaacacacctggcagtc
aaggacagtttagcctaccagcctctactagatctggtggtgcagctggccagagacctg
cagaccgacttctaccctcacttccctgacttcttccttctgatcacctcgttgctggac
actaaggacacagaggtgctggaatgggctttcacctgcctgtcctacctgtacaagtac
ctgtggaggcttatggtgaaagatatgaccaacatctacagtttgtacagcacactgttg
gcacacaagaaggagcacatccgcaagtttgcagcagagagcttctcttttttgatgaga
aaggttcccgatcttgatgccctgctgactcacgtgttctcagacctgcagcagcacccc
gacaaggcggagggaacgggtcagctgctgttcgagatgtgcaaaggtgtccgaaacatg
ttccactcctgcgctgcaactgctctccctgtagctttgcggaagctcggtcctacagcc
gatcaggaagtctctctgccgtgggacaccgtcagggattctttggatcacatgggccag
gctgcagccaatcatgtcgaaaaagaacatttcctggtgttgtgggagtccctgcaggtc
agagtggtggaggtccttggcgtcatggaggcaaagggagaagaggcagaacaagccaca
gaacagctggagaggctgctgttcattttccacaccctggtgtcacacagggacggagcc
aaggtcaccaagccggaggcagtctgccagacggtgctccgcctggttcagagctcggct
ctgtcaacttcctgttcccggctgcttcttcagatcatctcctctctgctgctcggggag
aacatcagcctgcccaaagcgctcatccaggagacggttcagaaggtgtttggcagcaca
atggggcaagatctgatcctagagtttaccaaggagatgttcaccatgaaacactttgaa
cagctcttcctccccagcctgctgcgcttcaccaccgggttgttcggctgtggcgacccc
ctgtctcgccaccagggcctggaggtcctggtcagtctaatccttgccaaagccccacca
cccacagatggatccatggcctttgaaacctacccacttctcttcaccggacaaactaca
ggagtgtttagtattaaggaggcgggtcaggcttcacgagagcagttggcggtgccagag
ctggtgctgtcactcatcaaacttcctgaggagcagaatcagcccatcactgatctgtcg
ctgctatgggcctcactggtgctgctgccacacctcaggcctcttgttccagctagcatt
gttcccgctgtcaccgctttcttaaaccacctgctgtgtgaaattgagacagagaatttg
gggaaagctggtctcttcgtagccacgcaggccctcagctgcctcctcactctggacggc
tccgcccagctgctctcactggtcaccgtggacaagatcagctcaatgctacgaaagttt
ccctcagacctgtcggccctgttgctaggagacctctactacacccgcctgtcactcagc
ggcgtatcagagcacctatcccacagtgcactgctggagctctaccagattctacacacc
aacctctcctccaacatctctaagatccgcctgctaactctgaggatcctctctcacttc
gaggcagatctccccccacagattgagggtgaggagaacgtggaggtgcagccggtgttc
gcggtgtgcctgcaggccgagctggtgccggcctcagtgcaggactacagagagaagctg
ctccacctcaggaagctgcgtcacgacctggtgcagcgcagcctgccgcaggggccacag
ggcaccttccagcaggtgcctctgcgttacctcatcgcaatgctgttcgtcaatttcaga
ccactttgggacgcagtcattgaacttgttgtgacccatgccagagggatggacaacaag
gacttctggaaggtctaccatgaacatctggagatggtggcaggaatagctgaaaaagaa
ctgcaggagtacgatgaagaggatgacgacgatgaatcgggagagtcagatcttcatggc
gagccaggctgtgatgtcatcgagagcggggacatgggggtgctgtttttgcagcagctg
aagtcaagcttcaaccccaacgagaggacggacttccccaacttccgcagcctgctgtgg
cgtgccatggcccagttccccgaaagagtggaaccgcgcagccgagaactgagccccctg
ctgctcaggtttatcaggaacgagttttaccctgctgacctgcaggtggcgcccactcag
gacctgaggaaaaggaacgatgctaccctcgaggaatctgagatggctggagaggaagaa
gaggagaaagaggagaaagaggaagaggagccagaggaggaagtcaggcagcagaggaaa
gcgcccccaaggagagccgccgccaaacagctgattgctcatctgaaggtattcgccaaa
ttcaccaaccctcgctctctctgcctggaaagcagcctcagtgagctctacaaccagctg
ctctgccatcaagatcatcagattcagcgagtggcactagaatgcattctcacatacaaa
gactccaacatagtaccatacaaggagaatctggagaggttactggatgacaaacacttc
aaagaagaaattgtccatttcaacatctcagaggagacagaagtgattgatgcttcccac
agagccaaactcatcccagtgctcatgaggatcctgtttggccgtctgcgcactaaatcc
ggcagtaagtttcaggggaaggccagcgccgccaccaggtcctccatcattctgcgcttc
ctggcaggctgccacgcagaggagctgggaatgttcatcgacctgctgttggagcccgtc
tgccatcacagcgaaggttcctgcctgaccgcagtggagagagccatagccgagaccaac
gtaggtgccgtcctgccgctgggccgacagcacagcctgctgaacgtcatccacgtggtg
atccagaaactgggccacctcatccagatctacctgcccaaggtgctgcagatcctgctg
tgtgtcactgcctctgtgtcaaccatcctggacagcagggaccagctgcgggcaggttgc
atcagtcctctgaagaacttgaggcgactcggcatcttgaggatccaggacttcttcgac
ggctttgactgctacagcttcagcccagacgagctagacgccgtcttccaggctgtagtc
tggcctcaggtgtgtcgtctccctacagagagcccctactctcccaccccactgcttaaa
ctcatccacgtgtggtgcaaaaatcctagattcttccccctcctggccaagcagaggcca
gaccacccagagtgcggtgtcctcctaaacgtcttcgccctcctctttgccaagaaggct
tccccagtgactatcgccatggtaatggacatagccgagtccctagcaaccacagaagat
tttgttgcctcggagaatgagacggagcttagcgtcaacagcagtgtgtttccacagcct
aaagagggcgctctcatcactgcagactcaataactcagggctccaggctgctgctgcct
cacatctccaccctgctgcagtacctcagcagcgttgtgcgcaacaccgacagactcaag
aagaagaagttcagagcgcaagtggccaaggagctcaacatcctctccaaggtcagccga
tttgtgagcgataaggagcagagttcagtgctcatcagtctgttgctgccctaccttcag
aaaggccacaaccctcaagagacagaaatcgacatcctggccaccatacagaacctgctg
cgacagtgcgtgcagccctctgccttcctccggccgctcagcaaactcttctccatcatt
cacaacaagctgcccagacgggccctcatcaacgtcttccagactctgtcagatctggaa
ccttctctcacatacattactgatgttactacaaagcttaatgctttagacagtcgacac
ttggatgaaatccactttgacgtgagactaacagctttccaagaagccaccagacgcatc
aacgatatgcagactctggacctggacttcatcgtcgccatcatacacaactgcttccac
acatatgagattggtgacatgtcgctgggagacaacgccaccttgtgtctgtccgccgtg
atcacccaggtggcagcggtcggggctggagagcagatgtacaaggacattgttcagcac
accatcctggacgctgtacacaaggggctccgcaacaaaacagagagtgtgcaacatgaa
tacacctgtgtactggcctgcctggtgaagacgtttccctccaggaaagagttcagagac
ctggtgcagctcactgactacaatgacccagagtctgacttttttgagcacatgaagcac
atccagatccaccgtcggggtcgtgccctgaggaagttggcaaagcagctgaccgagggc
acggtagtcatgacgccccgttcccttcagaattacatcatgccgtacgccatgaccatc
ctgctcgacgaaaagatgctgaagcacgagaacatgacatcagcgtcggtggaggtggtg
ggcgcagtttgtcgcaggctgacctggtccaagtacctctactacctaaaacactttgtt
cacatcctgcagacggggcaggctgagcagaaactggctgttagtttgctggtcacagtc
ctagatgctttccattttgaccaccagaccctcagcaaagaaatggaagctgctaaggcc
agagagggtgggagtgtcaagatggatgcaggagacgaggctgaagatgcaccagaagaa
tccgacgcaagcgatgatgaagaacccatggaggtagacagtaaggccgctacctctgat
gtccccatggaaaccgacaccacagataaggaaaaggatggcgtctctaaagaagcggcc
accactaaaaccgagaaacctccggctcccaaacctgtcgtagtacctagcgggctgcca
cagagcaaagaggagctggagactctgataaaggccatccaccagactgtgaatgacagc
gttctgccccgcctacaaaggtgtctcactgcaaaggtgaaacgtgatgaggagcacaag
gcagtgaagtctaaggaggtgaaggacgaggaggtggcgagagtaccgatagccttcgcc
atggtcaaactgatgcagactttgcctcctaacatcatggaaaccaacctgcctgggatc
ttgatcaaagtgtgtgtgctgctgaggaaccgtttccaggagatccgcgatgtggctcga
ggaacactggtgaagatccttgagacgcttggatgcaaatacctgcagtacctgctcaaa
gagatgcagggcatcctggttaaaggctaccaggtccatgtactaacattcacagtgtac
cagttgatctcagtccttactccaaccctgaagagtggagaccttgacccgagcatgaac
atgctcatcgatatcttcaacaacgagctgttcggagccgtagctgcggagaaagaggtg
aaggggatcgtctccaagctgatggaggcaagacacagcaagagtatggactcctacgaa
ctgctggcccacttctgcagcaaggagagcatcaccaagctcatactgccactgaaggag
atcctggaaacgtcatccagtctgaaggtgtgtaacagggtggctgctgtgctgcgccgg
ctggtcctgggtctgctcgtcaacgacggcatgacctcccaggacatcctgctgctgagc
cacggcctggtcagcgagagcctgccactgctcaccaagagagaccgagagaaagcatca
gctaagtcccccttagacccccgactgccacctcccagctgcctgctcctgcccccgacc
ccaaagagagggggtaagaaagctccagtcagcagccgaaccaacatgcacatcctagtg
gactcaggcctgaagctgctgcacttgagtctgaagaaagccaaagtgacatcgtctgag
aagtcttcactcgagatgctggacccctttgtgttgctgctgctcgactgtctcaactcc
atgcacgtcaaggtgaccacagaggctctggtggcattcacttggctgttaaagttccct
ctgccagcagtagagcaaaacgccgaccagctgaccaagcagctttttgtcctgctgaag
gattactccaaggcaggcgccgcccgcggggagaactaccagctggtccagaactgcttc
aaggccatcactatactggttaaaaatgtgaaaagcaataagatttcagagacacagctg
caagtgttgctgggatatgcagaggaggacatctacgatcagtctcgccaggcgactgca
ttcggcctgctaaaggcgatactctccaggaagctcatcgtaccagagatggagcagctg
atgaaaaaagtggccaagctgtctgtgaacgggagcaacgctatgattagaatccactgt
cgacagatctatctaaagtaccttctggactacccactggggaagaagctgagagagcac
ctggacttcattatggctcagttggcatatgagcatgacacaggcagggagtctgtgctg
gagatgctggcattcatctttcagactttccctaagaacttgctgcagcagcacaacggc
ctgttctttgccccgctggccttggttgtgattaacgacgactcgccacgctgtaagaaa
atggccgccatggccatcaaggccctgctggcccagctggacctgaacacccagaacacc
ttgttctccctggtcaacacctggatgaatgcagacaaagtcagtctgcggcgtctcggg
gctcaagtctgtggtctgttcgtggaggtggatgaggagaagtttacccgtcgcctagac
gacctgctgcctctcctcgaaaaagggatcgaccctgataactttgacgatatcgaggag
gagcaggatgagaaagaagcagaccggctgttgttcagttatctgacactcatcaccaaa
ctgagcaaacactgcggcctgctggagctcagcaagcctagcgacacactctgtcgcatc
tggggtcacattgaagcccacctgcggtaccctcactgctgggtgtggctgaccgcctcg
cagcttttcggccagctgtttgctgcccagcaggcagagcagctggtagctatgtggagc
gaagagggaggcagcaattcacctcagcaggcagcaacggccttcatcatcaaaggcctt
gataagaagatgagagagttggcgttatcgttctgccatcagctacagtccaagttcctg
gacacggcgtcaggagaacaggtgatcaagaacctgctcttcgttggcaaggtaatctac
ctcatatcacccgagtgtgatgtcactccccctcaagaagaagcaaaagagaaggaagaa
gaggagcagatggaggacaaaaacggagatggagaggagggagtggacggggatgagcag
aaagatgaggagaaagaaaaggaagatgaggaagatgacaaggacgatcggccaccttcc
ctgctgtggctgatgaagaagctggtactgatggcgaaaagagaggcagcgtacactccc
aaagttcccctgaagagaacatgtgtgtttaagttccttggagcgatagccatggatctg
ggaaaggaacgggtcggcccctatttgaccactgtcatcactcctctgtacagagaactg
gacagcacctatgcagaccaagaccccacactgaagaacctggcacaagagctgatagag
ctgctaaagaaacaagtgggactggagaaattctctctggcattctcctcagtacagaag
gagttttcagtgaggcgagcggcacgcaaacgccaacgagccatgcaggcggtggctaac
ccagacatcgctgccaagaagaagctcaagaagcacaaaaacaaaatcgaagccaaaaag
aggaagatcgagttccttcgccctggatacaaagcgaagaagcaccggagccacgctctc
aaagacctggctatggtgcagtga
DBGET
integrated database retrieval system
