Scomber japonicus (chub mackerel): 128385267
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Entry
128385267 CDS
T09718
Symbol
trim24
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sjo01001
]
128385267 (trim24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128385267 (trim24)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128385267 (trim24)
Protein kinases [BR:
sjo01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
128385267 (trim24)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128385267 (trim24)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
zf-C3HC4
PML_CC
PHD-1st_NSD
DUF1351
zf-RING_2
DUF1319
Motif
Other DBs
NCBI-GeneID:
128385267
NCBI-ProteinID:
XP_053200100
LinkDB
All DBs
Position
23:10655039..10665410
Genome browser
AA seq
1082 aa
AA seq
DB search
MDESAENVNDDIVIIVENEAESLPAEEERLKQLGTFGLMDTCPICKLSFHNREPKLLPCL
HSFCKRCLPAPFRTADPRRDSQGQVDNNKSSVGAIRCPVCRQECWEMDVLDNFFVKDSAE
VPSSTVEKNSQVCMSCEDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKEEMSP
GKAVGISTQKPVFCDVHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRNHRQN
LENMTQQLQEKRKAIEDVSSCINTGLQQVEENRKSVTNEIKKSICNLIMEINRKGKILVN
QLEALTKDHELGLKKQQEDVNSLTRHLDHVIRFTKWATASHSGTALLYCKRLILFQIHYL
MRASCSPSIVPQSSVRFQCRSGFWATNVDLGSLVVERGPGRPTVSNHQPGPRPEVPTGAL
SVSAQQRQSTLAQLQMQVEKLSQQPHRQPPPNHWSWYQNVRLPGPTGPPPPTRPIHGGSS
PSQCPTSMAQPGPGPGRRYGSSNPNSNPRSPTSSMLHNAGFPPPQSLRDLILSSSFPPKP
VDVLQGTSRYPQPMSSAGAATQTSLHQRGLAESSFLKRSEAGGTVPSITISIPKPSFASS
LASATADKTSALNHITVQGRQNSPMAKPSSTDRSTGTTSWKQTPEPPSAPSAKRRRRTSP
GPVIVIKDEPEDEDEVRFVQSSLPDSSTGAQSKPRQQLKVCPQPPAPRSDLSPGKEQHPQ
PAAQPAESEKRAEPEEDPNEDWCAVCQNGGELLCCDKCPKVFHLSCHIPTLNESPSGEWF
CSFCRDIASPEMVYDCDSKDDPDPDGLQPVDRRKCERLLLRLFCNDFSTDFQQTASTSET
KRYKELIKTPMDLSIVKKRLESKLKDVECYISSEGFVADVRLIFFNCAKYYKATSEVGSA
GLYLEDYFEEQLKLVYPDKTFPGGREDQMIPPLEDEIDEEEEQAMEEGMAPIEDDKPADP
VDEGIPPVEDDMAHLEEGTASVEEQEPEIKEQQTDMSEEITDLKVANEEECKLPAEEVKE
DEKTPLEEEKNSQADDGETTNGVTASSPKEESPQVPTDKDADPSESQEKESAPENTAKEE
EG
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagtgccgaaaatgtcaacgatgacattgtcatcatcgtggaaaacgaggcg
gaaagtttgccagccgaggaggagaggctgaaacagctgggcacctttgggctcatggac
acttgtcccatctgcaagttgagctttcacaatagagagcccaaactgctgccgtgcctc
cactccttctgcaagaggtgtctgcctgccccgttcaggaccgccgacccgaggcgtgac
tcgcaaggacaagtcgacaacaacaaatcatcagtaggcgccatccgatgtccagtatgc
agacaggaatgctgggaaatggacgtgttggataatttctttgttaaagactctgccgag
gtgccgagcagcacagtggagaaaaacagccaggtatgcatgagctgtgaggacaacacg
gaggcgacaggttactgcgtggagtgtgttgagtttctgtgtgtgacgtgcattgaggcg
catcagagggtaaagttcaccagggatcacaccatacggcagaaagaggagatgtcgcca
ggtaaagcagtaggcatttccacgcagaagcccgtcttttgtgacgtccacaagcaggag
ccactgaagctgttttgtgagacgtgcgaccgactcacctgtcgagactgtcagctgctt
aaacacaaggatcacaactaccagtttctagaggacgcatacaggaaccacaggcagaat
ctggagaacatgactcagcagttgcaagagaaaagaaaagccattgaggatgtttccagc
tgtatcaacactggactccaacaagttgaagaaaaccgaaagtctgtaactaatgaaata
aagaagtctatctgtaacttgattatggagataaacaggaagggaaagatcctggttaac
cagcttgaggctctgactaaagaccacgagttgggtttgaaaaagcagcaagaagacgtc
aactctctcaccagacacctagaccacgtcatcagattcactaaatgggccacagccagc
cacagtggaacagccctcctgtactgcaagagactgattcttttccagatccattacctg
atgagagcaagctgcagtccctccatcgtccctcagagttctgttcgcttccagtgtcgc
tctggtttctgggccacaaatgtagatctcggttctctggtagtagaaagaggcccggga
cggccgaccgtcagcaaccaccagccaggtcctagaccagaggtgcccactggagctctg
tcagtctcagcccagcagcgacagagtacgttggctcagctccagatgcaggtggaaaaa
ctctcccagcagccccacaggcagcctcctcctaaccattggtcctggtaccaaaacgta
cggctcccaggacccaccggccctcctcctccaaccagacccatccacggaggatcctcc
ccgtcccaatgccccaccagcatggcacagccaggaccaggaccaggacgcaggtacggg
agctccaaccccaactctaaccccagaagccccacctcctccatgcttcacaacgccgga
tttccacctcctcaatctctgagagatctgatccttagctccagcttcccccctaaaccc
gtggatgtgttgcagggtacgtcccgctacccacagcctatgtcctctgccggagcagct
acacagacatcactgcaccagcggggcttagcggaatcgtctttccttaagaggagcgaa
gcaggcggaactgtcccctccatcaccatctccatccccaaacccagctttgcttcaagc
ctggcttcagcaaccgcagacaaaacaagcgcgctcaatcacattacagttcaaggaagg
cagaattcaccgatggccaaaccgtcttctacagacagaagcacggggacgacttcctgg
aagcagactcccgagccaccatctgccccctcagccaagcgacgaagaagaacgtccccc
gggcccgttatcgtcatcaaggacgaaccagaggacgaggatgaagttcgctttgtgcaa
tccagccttccagacagcagcaccggggctcagtccaaaccccggcagcagctgaaggtg
tgcccccaacccccggcccctcgatcagacctctcccccggaaaagagcagcaccctcag
cccgcagcccagccagccgagtccgaaaagagagcggagccagaagaagaccccaacgag
gactggtgcgccgtctgtcaaaacggaggggagctgctctgttgcgacaagtgtcccaaa
gttttccatctgtcctgccacatccccactctgaacgagtcccccagcggcgaatggttc
tgttcattctgccgagacattgcctctcctgagatggtgtacgactgcgacagcaaggac
gaccccgaccctgacggattgcaacctgttgacagaaggaaatgtgagaggctgctgcta
cgtttattctgcaatgacttcagcactgacttccagcagactgcttctacatcggagacg
aaaaggtataaagagctgatcaagaccccgatggatttatcaatagttaagaagaggctg
gagtcaaagctgaaggatgttgaatgttacatcagttctgaggggtttgtcgcagacgtc
aggctcatatttttcaactgtgcaaagtactacaaggcaacctcggaggtggggagtgca
ggcttgtacttggaggactactttgaggaacaactgaagctcgtttacccagacaagacc
tttcccggaggaagggaagatcagatgatccctcctttagaggatgagatagatgaagaa
gaggaacaggcgatggaggaaggtatggctcccatagaggacgataaaccagcagatcct
gtggacgaaggaatcccccctgtggaagatgacatggctcatctggaagaggggacagct
tcagtggaggaacaagagccagaaattaaggagcagcagactgatatgagcgaagagata
acggacctaaaggtggcaaacgaagaggaatgcaagctgcctgcagaggaggtaaaggag
gatgagaaaactcctttggaagaggagaaaaactctcaagctgatgatggtgaaacaaca
aatggggtgaccgccagctccccaaaagaggagagccctcaggtccctacggacaaggat
gcagatccgtctgaaagccaggagaaggagagcgctcctgaaaacacagccaaagaagag
gagggatag
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