Scomber japonicus (chub mackerel): 128385356
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Entry
128385356 CDS
T09718
Symbol
prdm4
Name
(RefSeq) PR domain zinc finger protein 4
KO
K12463
PR domain zinc finger protein 4 [EC:2.1.1.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128385356 (prdm4)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128385356 (prdm4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
Zn_ribbon_PRDM4
zf-C2H2
zf-H2C2_2
zf-C2H2_4
SET
zf-C2H2_jaz
DUF7479
zf-C2H2_16
C2CH-3rd_BIRD-IDD
Motif
Other DBs
NCBI-GeneID:
128385356
NCBI-ProteinID:
XP_053200199
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Position
23:10888252..10894708
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AA seq
886 aa
AA seq
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MNDMNLSPVGMDQLSVPSVSASHLGLPTSPTHNPIPTPGMPVAIPSLGPSLGSLPSALSL
MLPMGPLGDRGVMCGLPERNYSLPPPPYPHLESSYFRHILPGILSYLADRPPPQYIHPSS
LNMDGTLSVASNNPSGLDPYSGPGGPLEQGLVPMDSRQVSGQGDLHQAAAHELDSTGLTM
ESRVSSPMSPDRMGEELATMDGVGVVSDNQQQLGGGRQPQPHEGLTGVDSSGGVMPLHGP
PVLELPVVMEPDHMGGRVGNAGGGGAGGLGEQLHTNGELNSGVVSVVLTGSMASQGQLEP
VSLHGHSGMGLEAVNVSPITAEVSLGPENNLVLVNSSLQLEDSTSNKENMVTAYTIWCTL
CERSYTSDCPEHGPVTFIPDTPIQSRARLSLPRPLCLRISVADEPLGVYARDVIPPRTCF
GPMVGQHCSNVDLSDWPEKDTPQLWKMYHNNVLEFYIVTTDENECNWMMFVRKARTRDEQ
NLVAYPANGKLFFCTTTEIHPDQELLFYYSRDYCRLMGIPQVPEGQICHCGKECSSFSEL
KSHLNSHNSNHSHNQPPPHSHSPSQQDHSQQQLTQQQQQQQEQQPQQQQHTHQEEKLTNG
TSSSSSSPWPCHTHAAGQTNGDNNSGGGCRSSGNRNANNVTSRTNSKGQGHAREKKFKCS
MCSRAFSTSTKLNVHFMGHVGMKPHKCEYCSKAFSDPSNLRMHLKIHTGQKNYRCTVCEK
SFTQKSHVASHMLIHTGAEKLKCDLCDRAFIRKHDLKQHMFSHTHERRIQCPKCNKHFLK
TNHLKKHMNSHEGRRDFVCEKCHKAFLTKYHLTRHLKICKGPKTERTSRKEQDVDEDEEE
EDEEEDDGRMRGGGGRGERLVDSAGNDDCGLDVGGYNSEKSLSPPQ
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacatgaacctgagtcctgtgggcatggaccagctcagtgtgccctcagtgagt
gccagccacctgggtctgcccacctcccccacacacaaccccattcccaccccaggtatg
ccagtggccatccccagcctgggtccttccctgggctccctcccctctgctctgtcgctg
atgttacccatgggtcctctgggggacaggggagtgatgtgcggcctgccggagaggaac
tactccttgccaccccctccgtacccccacctggagagcagctactttcgacacatattg
ccaggtatcctgtcttatctggccgaccgtccaccgcctcagtacattcaccccagcagc
cttaacatggatgggaccctgtctgtggccagcaacaatccttcaggtctggacccctac
agtggccctggaggcccactggagcagggcctggtgcccatggattctagacaggtcagt
ggccagggagacctccaccaggctgctgcacatgagctggactccacagggttgaccatg
gagtcgcgtgtcagcagccccatgtcccctgacaggatgggagaggagctggccaccatg
gacggggttggggtggtgtctgacaaccagcagcagcttggagggggaaggcagcctcag
ccgcacgagggcctgactggggtggactcctctggtggggtgatgcccctgcatggacca
cctgtgctcgagctaccagtggtgatggagccggatcatatgggggggcgagtgggcaat
gctgggggaggaggggcaggagggctcggagagcagcttcacacaaacggggagctgaac
tcaggtgttgtcagtgtggtgctcactggctccatggccagccagggccagctggagcca
gtgtccctccatgggcactctgggatggggctggaggcagtaaatgtgtctcccatcact
gcagaggtgtcgctggggccagaaaacaacctggtgctggtcaactccagcctgcagctc
gaggattcgacctccaacaaggagaacatggtcactgcttacaccatctggtgcacacta
tgtgagcgttcatatacctcagactgcccagagcacggcccagtcaccttcatccctgac
acgcccatccagagccgggctcgcctctctctcccacgtccactgtgccttcgcatctca
gtggctgacgaaccgcttggagtttatgcgcgggacgttattcctccgaggacctgcttc
ggaccaatggttggccagcactgtagcaatgtggatctctctgattggccagaaaaagac
acacctcagttatggaagatgtaccacaacaatgtgctggagttctacatcgtgacaaca
gatgaaaatgaatgcaactggatgatgtttgtccgcaaggcaaggacccgtgatgagcag
aacctggtggcgtaccctgccaatggtaaactgttcttctgtacaaccacagagatccac
ccggaccaggagctgctcttctactacagcagagactactgcaggctgatgggcattcct
caggtgcctgagggccagatctgccattgtggcaaagagtgctcctccttttctgagctc
aagtctcatcttaatagccataacagtaaccacagccataaccaacctcctccgcacagc
cacagcccatcgcagcaggaccactctcagcagcaactaacacagcagcagcagcagcag
caagagcaacaaccacagcaacagcaacacactcaccaggaagagaagctgaccaacggg
acctcaagctcctcctcgtcgccatggccctgtcacacgcacgctgctggacaaacaaac
ggagataacaacagcggcggcggctgcaggagcagcggtaataggaacgctaacaacgtt
acctccagaacaaactctaaaggtcagggccacgcacgggagaagaaattcaagtgcagc
atgtgttcacgagccttcagcacatccactaagcttaacgtgcacttcatggggcatgtg
ggaatgaagcctcacaagtgtgaatactgcagcaaggcttttagtgaccccagcaacctc
aggatgcacctcaagattcacacaggtcagaagaactacagatgcacagtttgtgagaag
tcgttcacacagaaatcccacgtggcgtcgcatatgctcatccacaccggtgcagagaaa
ctcaagtgtgacctctgtgaccgggccttcatcaggaaacatgacctaaaacagcacatg
ttctctcacacccatgaacggcggattcagtgcccgaagtgcaacaaacattttctcaag
accaaccacctgaagaagcacatgaactctcacgagggccggagagactttgtctgtgag
aaatgccacaaagctttcctcaccaaataccacctcacccgtcacctgaagatatgtaaa
ggacccaagacggaaagaacgtcccgcaaggagcaggacgtagatgaggacgaggaggaa
gaggatgaagaggaggatgatggcaggatgagaggaggaggaggaagaggagagagactt
gttgactcggctggaaatgatgactgcggtttagacgttggcggatataactctgagaag
tccctgtcaccccctcaataa
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