Streptomyces kanamyceticus: CP970_12845
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Entry
CP970_12845 CDS
T06849
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ska
Streptomyces kanamyceticus
Pathway
ska03030
DNA replication
ska03410
Base excision repair
ska03420
Nucleotide excision repair
ska03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ska00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP970_12845 (ligA)
03410 Base excision repair
CP970_12845 (ligA)
03420 Nucleotide excision repair
CP970_12845 (ligA)
03430 Mismatch repair
CP970_12845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ska03032
]
CP970_12845 (ligA)
03400 DNA repair and recombination proteins [BR:
ska03400
]
CP970_12845 (ligA)
Enzymes [BR:
ska01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP970_12845 (ligA)
DNA replication proteins [BR:
ska03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP970_12845 (ligA)
DNA repair and recombination proteins [BR:
ska03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP970_12845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP970_12845 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP970_12845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP970_12845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QEU91652
UniProt:
A0A5J6GAR4
LinkDB
All DBs
Position
complement(3180248..3182431)
Genome browser
AA seq
727 aa
AA seq
DB search
MAVEQQGSVPAEARDQHAQLAEQIEEHRFRYYVKDQPVVSDAEFDKLLRSLEALEEKHPE
LRTPDSPTQKVSGAYETEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGSPGYHFLC
ELKVDGLAVNLTYEDGKLTRAATRGDGRTGEDITPNVRTIADIPDRLKGDRVPALVEIRG
EVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRITATRPLHMVVHGIGAREG
FDIDCLSHAYELLHEWGLPTAQHNKVVDDLQGVRDFIAYFGENRHSVAHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKKKGVFIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECPECGT
ALRPMKEGDIDLRCPNAQTCPAQLRERLFYLAGRKSLDIENFGYVAAAALTRPLEPAEPP
IRDEGDIFDLKIEELLPIKSYVLDQDSGLPKRDPKTGEEKVVTFFANQKGEAKKNSLAML
ENIAAAKDRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAVVEGVGGTIA
ASLKQWFAEEWHREILRKWRAAGVRMEEEASGEDEGPRPLEGLTVVVTGTLEHHTRDGAK
EALQSRGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLEQGPDAAKE
VALPTEE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagcaaggctctgtgcccgccgaggcacgggatcagcatgcccagctg
gccgaacagatcgaggagcaccgcttccggtactacgtgaaggaccaaccggtcgtcagc
gacgccgagttcgacaagctcctgcgttctctcgaagccctggaggagaagcatccggag
ctgcgcaccccggattcgcccacccagaaggtctccggcgcgtacgagacggagttcacc
tcggtcgagcaccgcgagcggatgctctccctggacaacgccttcgacgacgaggagctg
gccgcctgggcggagcgcgtcgccaaggacgtcggctcgccgggctaccacttcctgtgc
gagctgaaggtcgacggcctcgcggtcaacctcacctacgaggacggcaagctgacccgc
gccgcgacccgcggcgacggccgcaccggcgaggacatcacaccgaacgtccgcacgatc
gccgacatccccgaccgcctcaagggcgaccgcgtgcccgccctcgtcgagatccgcggc
gaggtcttcttcccgatggagaagttcgaggagctgaacgcccgcctggtggaggcgggc
gacaagcccttcgccaacccgcgcaacgcggcggcgggttcgctgcgtcagaaggacccg
cgcatcaccgccacgcgcccgctgcacatggtggtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctcagccacgcctacgagctgctccacgaatggggcctgcccacc
gcccagcacaacaaggtggtcgacgacctccagggcgtccgcgacttcatcgcgtacttc
ggggagaaccgccactccgtggcgcacgagatcgacggcgtcgtcgtcaagctcgacgag
atcccgctgcaaggccgcctcggctccacctcgcgcgccccgcgctgggccatcgcctgg
aagtacgcgcccgaggaggtcaacaccaaactcatcaacatccgcgtgggcgtcggccgc
accggccgcgtcacgccgtacgcccaggtggaacccgtcaccgtcgcgggctccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtgaagaagaagggcgtcttcatcggcgac
acggtcgtcctgcgcaaggcgggcgacgtcatcccggagatcctcggccccgtcgtggac
ctgcgggacggcagcgagcgggagttcgtgatgcccgccgagtgccccgagtgcggcacg
gcgctgcggcccatgaaggagggcgacatcgacctccgctgccccaacgcccagacgtgc
cccgcccagttgcgtgaacgtctcttctacctggcgggccgcaagagcctggacatcgag
aacttcgggtacgtcgcggcggccgcgctcaccaggcccctggagcccgcggagccgccg
atccgcgacgagggcgacatcttcgacctgaagatcgaggaactgctccccatcaagtcg
tacgtcctcgaccaggactccggcctgcccaagcgcgacccgaagaccggcgaggagaag
gtcgtgaccttcttcgccaaccagaagggcgaggcgaagaagaactccctcgccatgctg
gagaacatcgcggcggccaaggaccggccgctcgcccgcgtcctgacgggcctctcgatc
cggcacgtaggaccggtggccgccgaggcgctggcccgcgagttccgttccatcgaccgc
atcgaacaggccacggaggaggagctggccgtggtggagggcgtcggcggcaccatcgcc
gcctccctcaaacagtggttcgccgaggagtggcaccgcgagatcctgcgcaagtggcgg
gcggcgggcgtccgcatggaggaagaggcgagcggcgaggacgagggcccccggccgctc
gaaggactcacggtcgtggtcaccgggaccctcgagcaccacacccgggatggcgcgaaa
gaggcgctgcagagccgtggcgccaaggtgaccggttccgtttcgaagaagaccgcgttc
gtggttgtgggggacaaccccggatccaagtacgacaaggccatgcaactgaaggttccg
gttctcaatgaggaaggcttcgctgtcctgctcgaacagggaccggacgcggcgaaggaa
gtcgcgcttccgaccgaggagtag
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