Sanguibacter keddieii: Sked_10480
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Entry
Sked_10480 CDS
T01214
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ske
Sanguibacter keddieii
Pathway
ske03030
DNA replication
ske03410
Base excision repair
ske03420
Nucleotide excision repair
ske03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ske00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sked_10480
03410 Base excision repair
Sked_10480
03420 Nucleotide excision repair
Sked_10480
03430 Mismatch repair
Sked_10480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ske03032
]
Sked_10480
03400 DNA repair and recombination proteins [BR:
ske03400
]
Sked_10480
Enzymes [BR:
ske01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sked_10480
DNA replication proteins [BR:
ske03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sked_10480
DNA repair and recombination proteins [BR:
ske03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sked_10480
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sked_10480
MMR (mismatch excision repair)
DNA ligase
Sked_10480
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sked_10480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ACZ20997
UniProt:
D1BCZ9
LinkDB
All DBs
Position
1219283..1221898
Genome browser
AA seq
871 aa
AA seq
DB search
MSTKKPSGPPAGTSETDEQASPGSAAPSGSASSATEASAELSAARTRWAELAETIEAHQF
AYYVRDAPTVSDAEYDTLLRELGDIEEAHPQLRTPDSPTQRVGGTFSTDFAAVDHREQML
SLDNAFNAEDLDAWAERVHREIGTSQVHYLCEVKIDGLAIALLYEKGRLVRAATRGDGRT
GEDVTLNVLTIEGIPKALDASVREVPDLIEIRGEVFMLVDQFAALNEAQVAAGKPPFANP
RNAAAGSLRQKNPKITAGRPLRMYAHGVGALHWEAGTPSELRRQSDAYDYFRAWGVPVSD
HNRVVEGMPGVQEMIDYYGDHRHDIEHELDGIVVKVDELALQRQLGATSRAPRWAIAYKY
PPEEVNTTLLDILVNVGRTGRVTPFGMMEPVLVAGSTVSMATLHNGSEVRRKGVLIGDTV
VLRKAGDVIPEIVGPVVDLRDGSEREFVMPTECPSCGTTLAPAKEGDVDIRCPNQRSCPS
QLRERVFHLAGRGAFDIEAMGWEAAIALVDPEHNRPESADAEGVPVQVPVLETEAGFFDF
EVDALADVLVWREKKKAGVGTGVWEQVPFFWTKATAKTPSKPSATTVKFFEEREKAKARP
LWRVLVALSIRHVGPTAARALATAFESVEAIMAATEEELAATEGVGPTIARAVRIWFNGR
SSVEPVPVAAAPTTEADTDEADTDEADTDAVPGDGVELPADAVPGDGAPPADAPDPGKAS
SADEVHDEDDDVEIDGSDWHREIIDRWRAAGVRMRDERDESIVRTLEGFTVVVTGSLEGF
NRDQVKEAIIVRGGKAAGSVSKKTDFVVVGENAGSKEAKARELGLTILDEAGFVTLLAEG
PPAAAEPLLDDDGEPVVDGEPAVGEVEAPLS
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacgaagaagccttcaggtccccccgccggcacgtccgagacggacgagcaggcg
agcccgggcagcgcagcgccgagcggcagcgcgagctccgcgaccgaggccagcgccgag
ctcagcgccgcccgcacccggtgggccgagctcgccgagaccatcgaggcgcaccagttc
gcctactacgtccgcgacgccccgacggtctccgacgcggagtacgacacgctgctccgc
gagctcggtgacatcgaggaggcgcacccgcagctgcgcacccccgactcgccgacccag
cgggtgggcgggaccttctcgacggacttcgcggcggtcgaccaccgcgagcagatgctc
agcctcgacaacgccttcaacgccgaggacctcgacgcgtgggccgagcgcgtgcaccgt
gagatcggcacctcgcaggtgcactacctgtgcgaggtcaagatcgacggcctcgccatc
gcgctgctgtacgagaagggccgcctggtccgtgccgccacgcgtggcgacgggcgcacg
ggtgaggacgtcacgctcaacgtcctcaccatcgaggggatcccgaaggcgctcgacgcg
tcggtgagagaggtgcccgacctcatcgagatccgcggcgaggtcttcatgctcgtcgac
cagttcgccgctctcaacgaggcgcaggtcgcggccggcaagccgcccttcgccaacccg
cgcaacgcggcagcaggctcgctccgccagaagaacccgaagatcaccgccggcaggccg
ctgcgcatgtacgcccacggggtcggtgcgctgcactgggaggcggggaccccgtcggag
ctgcgccgccagtccgacgcctacgactacttccgggcgtggggcgtgccggtctccgac
cacaaccgtgtggtcgagggcatgcccggcgtccaggagatgatcgactactacggcgac
caccggcacgacatcgagcacgagctcgacggcatcgtcgtcaaggtcgacgagctcgcg
ctccagcgtcagctcggcgccaccagccgggccccgcgctgggcgatcgcctacaagtac
ccgcccgaggaggtcaacaccacgctcctcgacatcctcgtcaacgtggggcgcaccggg
cgggtgacacctttcgggatgatggagcccgtgctggtcgccgggtcgaccgtctcgatg
gcgaccctgcacaacggcagcgaggtgcgccgcaagggcgtgctcatcggcgacaccgtc
gtgctgcgcaaggcaggcgacgtcatccccgagatcgtcggcccggtggtcgacctgcgc
gacggctccgagcgcgagttcgtcatgccgaccgagtgcccgtcgtgcggcacgacgctc
gcccccgccaaggagggcgacgtcgacatccgctgccccaaccagcggtcctgcccgtcg
cagctgcgcgaacgcgtgttccacctcgcgggccgcggcgccttcgacatcgaggcgatg
ggctgggaggccgcgatcgcgctcgtggaccccgagcacaaccggccggagtccgcggac
gcggagggcgtcccggtccaggtccccgtcctggagacagaggccgggttcttcgacttc
gaggtcgacgcgctcgcggacgtcctggtctggcgcgagaagaagaaggccggcgtcgga
accggcgtgtgggagcaggtcccgttcttctggaccaaggcgaccgccaagacgccgtcc
aagccctcggccaccacggtcaagttcttcgaggagcgcgagaaggcgaaggcgcgtccg
ctgtggcgggtgctggtcgccctctcgatccgccacgtgggccccaccgcggcgcgcgcc
ctcgcgacggccttcgagtcggtcgaggcgatcatggccgcgaccgaggaggagctcgcc
gccaccgagggcgtcggtccgaccatcgcgcgtgcggtccggatctggttcaacgggcgg
tcctcggtcgagcctgtgccggtggcagccgcgccgactaccgaggccgacaccgacgag
gccgacaccgacgaggccgacaccgacgcggtccccggtgacggcgtcgagctgccggcc
gacgccgtccccggcgacggagcgcctcccgcggacgcaccggacccgggcaaggcctcc
tccgcggacgaggtccacgacgaggacgacgacgtcgagatcgacggctccgactggcac
cgcgagatcatcgaccgctggagggccgcaggcgtgcggatgcgtgacgagcgcgacgag
tcgatcgtccgcaccctcgaggggttcaccgtcgtggtgaccggatccttggaaggcttc
aaccgggaccaggtcaaggaggcgatcatcgtccgtggtggcaaggctgccgggtccgtc
tcgaagaagaccgacttcgtggtcgtcggggagaacgccgggtccaaggaggccaaggcg
cgcgagctcggcctcactatcctcgacgaggccggcttcgtcacgctcctcgccgaggga
ccgcccgcggcggcagagccgctgctggacgacgacggggagccggtcgtcgacggcgag
ccggccgtcggtgaggttgaggccccgctgagctga
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