Streptomyces koelreuteriae: KJK29_10200
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Entry
KJK29_10200 CDS
T09603
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
skg
Streptomyces koelreuteriae
Pathway
skg03030
DNA replication
skg03410
Base excision repair
skg03420
Nucleotide excision repair
skg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
skg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KJK29_10200 (ligA)
03410 Base excision repair
KJK29_10200 (ligA)
03420 Nucleotide excision repair
KJK29_10200 (ligA)
03430 Mismatch repair
KJK29_10200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skg03032
]
KJK29_10200 (ligA)
03400 DNA repair and recombination proteins [BR:
skg03400
]
KJK29_10200 (ligA)
Enzymes [BR:
skg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KJK29_10200 (ligA)
DNA replication proteins [BR:
skg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KJK29_10200 (ligA)
DNA repair and recombination proteins [BR:
skg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KJK29_10200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KJK29_10200 (ligA)
MMR (mismatch excision repair)
DNA ligase
KJK29_10200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KJK29_10200 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
PX
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QWB22929
UniProt:
A0ABX8FPH1
LinkDB
All DBs
Position
complement(2345932..2348127)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTTVPAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRSLEALEER
YPELRTPDSPTQKVSGSYETEFTAVEHRQRMLSLDNTFNDEAMAAWTERIARELGEQDYH
FLCETKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDSVPDLVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGLSRLSEAYALLKTWGLPVSGHNRVVDGLDGIREFIAYFGENRHSVEWEIDGVVV
KLDQIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECP
ECGTALRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEHFGYVAAAALTAPLEP
KEPPLLDEGDLFDLTIDRLLPIKAYVLDPDSGLPKRDPKSGEEKVATIFANQEGNPRKNA
LAMLENIAAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIERIDQASEEELKNTDGVG
PIVAAAVKEWFAEDWHREIIRKWKASGVRMEEESTGEGEGPRPLEGLTVVVTGTLEHFTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQMKVPVLNEEGFAVLLEQGPD
AAAEVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggggacaagcaagcggagacgacgacggtgcccgccgaggcacgggagaagcac
gcgcgcctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcgtcagcgacgcggagttcgacgaactgctgcgttccctggaggcgctggaggagcgg
tatccggaactgcgcacgccggactcgccgacccagaaggtctccgggtcgtacgagacg
gagttcacggcggtcgagcaccgccagcgcatgctctccctcgacaacacgttcaacgac
gaggcgatggccgcctggacggagcgcatcgcccgcgaactgggcgagcaggactaccac
ttcctgtgcgagacgaaggtcgacggcctcgccgtgaacctcacctacgagcacggccgt
ctcacccgcgcggccacccgcggcgacggccgcaccggcgaggacatcacaccgaacgtc
cggacgatcgccgagatcccggagcgcctcaagggcgactcggtccccgacctcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccggctggtc
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggttcactgcgccag
aaggacccgcgcgtcaccgccacccgccccctgcacatggtggtccacggcatcggcgcc
ctggagggcttcaccggtctcagccgcctctccgaggcctacgccctcctcaagacctgg
ggcctgcccgtttccggccacaaccgcgtcgtcgacggcctcgacggcatccgggagttc
atcgcgtacttcggcgagaaccgccactccgtggagtgggagatcgacggcgtcgtcgtc
aagctcgaccagatccccctccagggccggctcggctccacctcgcgcgcgccgcgctgg
gccatcgcctacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgcgtg
ggcgtgggccgcacgggccgtgtcacaccgtacgcgcaggtcgagccggtgacggtcgcc
ggatccgaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtcatccccgagatcctcggg
ccggtcgccgacctgcgcgacggcagcgagcgcgagttcgtgatgccgagcgagtgcccc
gaatgcggtacggcgctcaggcccatgaaggagggcgacgtcgacctgcgctgcccgaac
gcccgcacctgcccggcccagttgcgcgagcgcctgttctacctcgcgggccgcaagtcg
ctggacatcgagcacttcggctatgtggccgcggcggccctcaccgcgccgctggagccg
aaggagccgccgctgctcgacgagggcgacctgttcgacctcaccatcgaccggttgctg
cccatcaaggcctacgtcctcgacccggacagcggcctgcccaagcgcgacccgaagagc
ggcgaggagaaggtcgccacgatcttcgccaaccaggagggcaacccccgcaagaacgcg
ctcgccatgctggagaacatcgcggcggccaagcagcgcccgctcgcccgcatcctcacc
ggcctgtcgatccgtcacgtcggaccggtcgcggccgaggcgctggccagggagttccgc
tcgatcgagcgcatcgaccaggccagcgaggaggagctgaagaacacggacggcgtcggc
ccgatcgtcgccgcggccgtcaaggagtggttcgccgaggactggcaccgcgagatcatc
cgtaagtggaaggcctccggagtccgcatggaggaggagagcaccggcgagggcgagggg
ccgcgcccgctcgaagggctcaccgtcgtcgtcaccggcaccctcgaacacttcacccgg
gacggcgccaaggaggcgctgcagagccgcggtgcgaaggtgaccggatcggtttcgaag
aagacgtcgttcgtcgtggtgggtgacagccccggatcgaagtacgacaaggcgatgcag
atgaaggtgccggtcctgaacgaggagggtttcgcggtcctgctggagcagggaccggac
gcggcggccgaagtcgcgctttcggccgaggagtag
DBGET
integrated database retrieval system
