Shewanella khirikhana: STH12_01050
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Entry
STH12_01050 CDS
T06711
Symbol
swrC
Name
(GenBank) Swarming motility protein SwrC
KO
K18138
multidrug efflux pump
Organism
skh
Shewanella khirikhana
Pathway
skh01501
beta-Lactam resistance
skh01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
STH12_01050 (swrC)
01503 Cationic antimicrobial peptide (CAMP) resistance
STH12_01050 (swrC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
skh02000
]
STH12_01050 (swrC)
01504 Antimicrobial resistance genes [BR:
skh01504
]
STH12_01050 (swrC)
Transporters [BR:
skh02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
STH12_01050 (swrC)
Antimicrobial resistance genes [BR:
skh01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
STH12_01050 (swrC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Peptidase_U4
CCSMST1
Motif
Other DBs
NCBI-ProteinID:
AZQ10186
LinkDB
All DBs
Position
complement(1197535..1200777)
Genome browser
AA seq
1080 aa
AA seq
DB search
MSVITTSVKRPVTVWMFMLAVILFGMVGFSRLAVMLLPDLSYPTVTIRTLYDGAAPVEVE
QLVSKPIEESVGVVKGLRKISSVSRSGMSDVILEFEWGTDMDMASLEVREKLDIIALPLD
VQKPLLLRFNPNLDPIMRVALSLENASGDDLKQLRTYADEELKRQLEGLPGVAAVRLSGG
LEQEVQILLNQERLAQLDLSAEQIRSRIAAENLNVSAGKVVQGDKEYLVRTLNQFNSLEE
LGQVVVYKNGQSLVRLFEVATIIDGHKERSDITRIGDRESIELAIYKEGDANTVTVAKKL
KQDIARINGKEPLAKMEIIYDQSEFIESAVSEVTSAALIGSVLAMLVIYLFLRDIIPTLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENIDRYRKQGLNRM
DAAIKGTKEVSGAIFASTLTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTS
IPMLASREGFKALPPFLDKTPKAKPEGKMGKLKHYSATVFSFPFVLLFKWVPAMLLTLAL
MLTRLLSWLAGLVMRPLSSLFNLGYRALEAIYHPLLAGALKARVLTLVVALGVTASAGLL
LPRLGMELIPNMDQGEFYVEVLLPPGTEVSETDRVLQYLAHAIKDMPEVKHAYSQAGSGG
LMTSDVSRGGENWGRLQVVLKDHGAFEVVSDRLRSQIQRIPELEAKLKFPELFSFRTPLE
IELRGYELGLLKQSADTLVRALSESDRFTDINTSLRDGQPELAIHFDTNRLAALGLDAPT
VANRIAQRIGGTVASKYSLRDRKIDILVRAEEEERDQVSDIANMIINPDATTPIPLSAVA
EVTLELGPSAINRISQQRVAIVSANLAYGDLAEAVTEARSILASQQLPASVQAEFGGQNE
EMEHSFQSLKIALILAVFLVYLVMASQFESFLHPLLILFAVPMAVSGSVFGLYLTGTHVS
VVVFIGLIMLAGIVVNNAIVLIDRINQLREEGMDKLDAITEAAKSRLRPIMMTTLTTVLG
LLPMAMGLGDGSEVRAPMAITVIFGLALSTLLTLVLIPVLYALFDRKAFVPKAPLDGDMA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgatcacgacttccgtaaaacggccggtcaccgtgtggatgtttatgctggcg
gtgatcctcttcggaatggttggcttttcccgtctggcagtgatgctgctgccggactta
agctaccccaccgtcacaatccgcaccctctacgacggcgccgcgccggttgaagtagag
cagctggtgtccaaacccatcgaagagtctgtgggtgtggtaaaaggcctgcgtaaaatc
agctcagtgtcccgctccggcatgtccgatgtcatcctcgaatttgaatggggaaccgat
atggacatggcaagcctggaggtgcgcgaaaagctcgatatcatagcgctgccattggac
gtgcaaaagccactgctgctgcgctttaatcccaacctcgaccccatcatgcgcgttgcc
ctgtcgctggagaatgccagtggcgatgatctgaaacagctgcgtacctacgccgatgaa
gagctcaagcgtcagctcgaaggtctgcccggcgttgctgccgtacgcctgtccggcggt
ctggagcaggaagtgcaaatcctgctcaatcaggaacgtctggcccagcttgatctgagc
gccgagcaaattcgcagccggatcgccgccgaaaacctgaacgtgtcggccggtaaagtg
gttcagggcgataaagagtatctggttcgcacccttaaccagttcaactccctcgaggag
ctgggacaggtggtagtgtacaaaaatggtcaaagcctggtgcggctgtttgaagtggct
accattatcgacggccacaaagagcgcagcgacatcacccgcattggcgatcgcgagtct
atcgagcttgccatctacaaagaaggcgatgccaacactgtgaccgtggcgaaaaagctg
aagcaggacatagcgcgcatcaacggcaaggagccgctggcgaagatggaaatcatctat
gaccagtctgagtttatcgaaagcgccgtgagtgaagtcacctccgccgcgctgataggc
tctgtgctggcaatgctggtgatttacctgttcctgcgcgacatcatacctaccctgatt
atctctatatccattccgttttcggtgatagccacctttaacatgatgtattttgcggat
atcagcctcaacatcatgtcgctgggcggtattgcgctggcggtgggcctgttggtggat
aacgccatcgtggtgcttgaaaacatcgaccgttatcgcaagcagggcctgaaccggatg
gatgcggccattaagggtaccaaggaagtcagtggcgccatttttgcctctacccttacc
acgctggcggtgtttgtgccgctggtgtttgtagacggcattgccggcgccctcttctca
gatcaggcactgacagtaacctttgccctgctggcgtcactgctggttgctctgacctcc
attcccatgctggcatcccgcgaaggctttaaagccctgccaccgtttttggataaaacg
cccaaagccaagcccgaaggcaaaatgggtaagctcaagcattacagtgccactgtgttc
agtttcccgtttgttctgctgttcaagtgggtaccggccatgctgctgaccctggcgctg
atgctgacccgtttgctgtcctggcttgctggcctggtgatgcggccactgtcgtcactg
tttaacctgggttaccgcgcgctggaggccatttatcacccgctgttggctggcgccctt
aaggcacgggtgctgaccttggtggtggcccttggcgtgaccgccagtgccggtttgctg
ctgccacgccttggcatggagcttatccccaacatggatcagggcgagttttacgtggaa
gtgctgctgcctcccggcaccgaagtgagcgagactgaccgggtgctgcagtatctggcc
cacgccatcaaggacatgccggaagtcaaacacgcctacagccaggctggcagtggcggc
ctgatgacgtcggatgtaagccgcggcggtgagaactggggccgtttgcaggtggtgctt
aaggatcatggcgcctttgaggtggtcagcgacagactgcgcagtcaaattcagcgcatt
ccagagctggaagccaagcttaagttccctgaactcttcagcttccgcaccccacttgaa
atcgaactgcgcggctacgaacttggcctgctcaagcaaagcgccgataccctggtgcgt
gcgctgagcgagtctgatcgctttaccgatatcaacaccagcctgcgtgacggccagccg
gagcttgccattcacttcgacaccaaccgtctggctgccctcggtctggatgcgcccaca
gtagccaaccgtatcgcccagcgcatcggcggcactgtggcgagcaagtacagcctgcgc
gaccgtaaaatcgatattctggtgcgtgccgaagaagaggagcgcgatcaggtcagtgat
atcgccaatatgattatcaaccccgatgcgaccacgcctatcccgctgtcagcggtggcg
gaagtgaccctggagcttggcccctcggccattaaccgcatcagccagcaacgggtggcg
attgtgtctgccaacctcgcctacggcgatttggctgaagctgtcaccgaagcccgcagc
attcttgccagccagcaactgcccgcctcggtgcaggcggaatttggcggtcagaatgaa
gagatggagcattcgttccagtcgctgaagattgcactcatcctcgcggtattcctggtg
tatctggtgatggccagtcagtttgagtccttcctgcatccgctgcttatcctgttcgcc
gtgcccatggcagtcagcggcagcgtgtttggcctgtatctcaccggcacccatgtgtct
gtggtggtgtttatcggccttatcatgttggcggggattgtggtgaacaacgccatcgtg
ctgattgaccgcattaatcagctgcgggaagaaggcatggacaagctggatgccattacc
gaggcggccaaatcacgtttgcgccccattatgatgactaccctgaccacagtgcttggc
ctgttgccaatggccatgggccttggcgatggcagtgaagtacgtgcgcccatggctatc
acggtgattttcggtctggcgctgtcgaccctgctgacactggtgcttattcctgtgctc
tatgcgctgtttgacagaaaagcctttgtgcccaaagcgccactggatggagatatggcc
tga
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