Shewanella khirikhana: STH12_01159 Help Entry STH12_01159       CDS       T06711                                  Symbol ligA_1 Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism skh  Shewanella khirikhana Pathway skh03030   DNA replication skh03410   Base excision repair skh03420   Nucleotide excision repair skh03430   Mismatch repair Brite KEGG Orthology (KO) [BR:skh00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     STH12_01159 (ligA_1)    03410 Base excision repair     STH12_01159 (ligA_1)    03420 Nucleotide excision repair     STH12_01159 (ligA_1)    03430 Mismatch repair     STH12_01159 (ligA_1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:skh03032]     STH12_01159 (ligA_1)    03400 DNA repair and recombination proteins [BR:skh03400]     STH12_01159 (ligA_1) Enzymes [BR:skh01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      STH12_01159 (ligA_1) DNA replication proteins [BR:skh03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      STH12_01159 (ligA_1) DNA repair and recombination proteins [BR:skh03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      STH12_01159 (ligA_1)    NER (nucleotide excision repair)     GGR (global genome repair) factors      STH12_01159 (ligA_1)    MMR (mismatch excision repair)     DNA ligase      STH12_01159 (ligA_1)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       STH12_01159 (ligA_1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH Motif Other DBs NCBI-ProteinID:  AZQ10295 UniProt:  A0ABM7D1I2 LinkDB All DBs Position 1327325..1329337 Genome browser AA seq 670 aa AA seqDB search MQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEHPHLAEPDSPTQR VGGAALDKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGPQVYCAEPKLDGLAVSLI YRHGVLERAATRGDGAVGEDISVNVRTIKSVPLRLQGDDIPALVEVRGEVFMPRAAFEAL NDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDNGADLALAPTH KGQLERLSAFGLPVSKEVKLCEGLAEVMAYYGDILKRRDELAFEIDGVVIKVNDIEAQQQ LGFVARAPRWAIAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLH NGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVAERRPENAQEILFLDNCPVCGSLVERIE GEAVARCSGGLFCEAQRREAIKHFASRKAMYIDGMGDKVVEQLIDKELVASPADLFKLNV SKLTMLERMGTKSATNLVAAIEEAKTTTLPKFLYALGIREVGEATAANLAKHFLSLDAIK EADVDALMQVEDVGTVVAQHVAHFFAQPHNLEVIDALINAGVNWPAIEKPSADAQPLLGQ TWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLAKAQELGIPVLD EAGLIELIGL NT seq 2013 nt NT seq  +upstreamnt  +downstreamnt atgcaagtcaaagccgaaattcaacgtcttaccgctgaaatcaatcgtcacaacattgcc tactatgtgcaggatgcgccaagcattcccgatgcggaatatgaccggctgatgaaccag ctcaaagcgctggaagccgagcatccgcatttggccgagcctgactcacccacccagcgt gtaggcggcgccgcactcgataaattcgagcaggtcagccaccttaaacccatgctgagc ctggataacgccttcaatgaagaggactttgttgcgtttgataagcgtctgaccgataag gttggcccccaggtgtactgcgcagagcccaagctcgatggccttgcggtcagcctgatt taccgtcatggcgtgctcgagcgtgctgccacccgtggtgatggcgctgtgggggaagat atcagtgtcaacgtgcgcaccatcaagtcggtgcctttgaggctgcagggcgatgatatt ccggcgctggtggaagtgcgcggcgaagtctttatgccaagggctgcctttgaagcgctc aacgacagagcgcgcgccaaaggggataaactctttgttaatccacgtaatgccgccgcc ggtagtctgcgtcagctcgacagcaagataaccgccgagcgctcactggcgttttatgcc tatgcgcttggcgtagtgcaggacgataacggcgccgatctggcgctggcgccaacccat aagggccagttggagcgtttgtcagcgtttggtctgccggtgagcaaggaagtgaagctc tgtgaaggccttgccgaggtgatggcctactatggcgacatcctcaagcgccgcgatgaa cttgcctttgaaatcgatggcgtggttatcaaggtcaatgacatcgaagcgcagcagcag cttgggtttgtagcccgtgcaccgcgctgggccattgcctttaagtttccggctcaggaa gaaatgaccttgctggaaggggttgattttcaggtaggccgcaccggcgccgtgacgccg gtagcccgcttaaagccagtgtttgttggcggggtgaccgtatccaatgccacgctgcac aatggtgatgaaatcgcccgtcttggggtgaagattggcgataccgtgattattcgccgc gcaggtgatgttattccacaaatcgtggccgtggtggcggagcgccgccctgagaatgcg caggaaattctgttcctcgacaattgccctgtgtgtggctccctggtggagcgtatcgaa ggcgaggcggtagcacgctgcagcggcggtcttttctgtgaagcccagcgccgtgaagcc atcaagcactttgcttcccgcaaagccatgtatatcgacggcatgggtgacaaggtggtt gagcagcttatcgataaagagctggtggcaagcccggccgatctcttcaagctcaatgtc tccaagctgaccatgcttgagcgtatgggcaccaagtcggccaccaatctggttgccgcc attgaagaagccaaaactacgaccttgcccaagttcctgtatgcactggggattcgggaa gtaggggaggccaccgctgcgaatctggcgaaacatttcctgagcctggatgccattaag gaagccgatgtagatgccctgatgcaggtggaggatgtgggcactgtggtggcgcagcat gtggcgcacttttttgcccagccccataaccttgaagtgatagatgcgctgatcaatgcc ggtgtgaactggcctgccatcgaaaagccatcggctgatgcccagccgctgctgggacaa acctgggtgctcacaggaacactcaccagtcttggccgcaccgaagccaaagccaagctt gaggccctgggtgccaaggtggcgggcagtgtctccaagaacactcactgcgtggtcgcc ggcgaagcggcgggctcaaagcttgccaaggcccaggaactgggtattcctgttttggat gaggcagggctgatagagctgataggtctttga

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