Shewanella khirikhana: STH12_01249
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Entry
STH12_01249 CDS
T06711
Symbol
gdhB
Name
(GenBank) NAD-specific glutamate dehydrogenase
KO
K15371
glutamate dehydrogenase [EC:
1.4.1.2
]
Organism
skh
Shewanella khirikhana
Pathway
skh00220
Arginine biosynthesis
skh00250
Alanine, aspartate and glutamate metabolism
skh00430
Taurine and hypotaurine metabolism
skh00910
Nitrogen metabolism
skh01100
Metabolic pathways
skh01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
STH12_01249 (gdhB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
STH12_01249 (gdhB)
00220 Arginine biosynthesis
STH12_01249 (gdhB)
09106 Metabolism of other amino acids
00430 Taurine and hypotaurine metabolism
STH12_01249 (gdhB)
Enzymes [BR:
skh01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.1 With NAD+ or NADP+ as acceptor
1.4.1.2 glutamate dehydrogenase
STH12_01249 (gdhB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_GDH_CD
GDH_C
GDH_ACT1
GDH_ACT2
GDH_HM3
GDH_ACT3
GDH_HM1
GDH_HM2
ELFV_dehydrog
Motif
Other DBs
NCBI-ProteinID:
AZQ10379
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All DBs
Position
1432219..1437060
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AA seq
1613 aa
AA seq
DB search
MALKDAMPSVLLENVVSLIHSKVPNSQAKQVEQFASCLYAHMSKDDLHARTDSDLYGAVL
SLWNALGKTNTGESHVRVYNPTQSKHGWQSSHTIIEVIQTDMPFLTDSLGMALNRLGVTT
HMMLHTPLAIGRSDKGIDSVGFVKDSPDDADKVAVFLIEIDRQSSEADLKTLLGEIQSVL
SDVSAAVNDWQTMSAKLRSTIEELPKRPFPGTKEELDEAVAFLTYLNNHHFTLLGYRQYD
LKRVEGDMELVPNLESGLGLMNRPGKHKVEGLMLSTLSDNARKEALDDSLLILTKSSTKS
RVHRPAYVDYIGIKRFDKKGNVVGEDRFIGLYASNLYNRSPREIPLLAQKVQRVLDNSGL
VPKSHDYKALVNILENLPRDEIIQASEQELAHVAHGVLEMQDRDKLKLFVRKDGFGRFLS
CLVYVSKDRYNTKLRQDTQRILAQHFQSKEEVEFTTYFSESILARTHYIVKVDNNNMDVD
VAAIENNLIEAARSWEDKLYTSLNHSMGEEQGNRLSKRYLTAFSRSYKEDVLPNAAVVDI
QQLEALDEEHKLGMLFYQPQEAAINSNKVRLKLFHKDEPIHLSDVLPMLENFGLRVINER
PYEVKTPDGATFWILDFLMMVTGGNTENLADSQDRFQTALAQVWNKKLEDDGFNRLVLST
GLAGREVSILRAYAKYMRQIDATFSQAYIEQTFARYPEIADLLVKMFIRKFNPKLKTRTL
TKFQEQLNLRLEDVASLDDDRIIRRYLDLINATVRTNFYQTNAAGEGKDYISFKYIPRMI
PEMPKPLPAFEIFVYSPRVEGVHLRGGKVARGGLRWSDRREDFRTEVLGLVKAQNVKNTV
IVPVGAKGGFVCKQPPMDGSREAFFNEGQECYRIFIRGLLDVTDNIINGEIVPPVDVVRH
DEDDAYLVVAADKGTATFSDIANAISIEYNHWLGDAFASGGSNGYDHKKMGITAKGGWES
VKRHFREIGIDCQTTDFTCLGIGDMAGDVFGNGMLLSEHTCLVAAFNHMHIFIDPTPDAA
ATFKERQRLFDLPRSSWDDYNRELISKGGGIFLRSAKSITLSPEMQAMLGTDKTAMNPTE
LIKELLKMEVDLIWNGGIGTYIKSSRETNAEVGDRANDGLRVNGGDVRAKIIGEGGNLGC
TQLGRIEYAMNGGRMNTDFVDNVGGVDCSDNEVNIKILLNAMVAEGEMTLKQRNRLLEEM
TDEVSEIVLQDCKDQTRTISVTQVRGAEQLKEQIRFIHYLEKEGKLDRALEFLPTDDELA
ERLAAGKPLTRPELSVLVAYAKMVLKEQLVTAEITEDSFLSKLLVSYFPQKLQELYADKM
TSHPLRGEIIATSLANELVNDMGLNFVQRMQDETGATVAEVAICYTMAREVFGLAQLTMA
ISAQNGVVPAVVQLEMLHQLRRNVRRACRWFLRHRNRNNSIEQTVAFFKPVFDELKANVH
QYMVAEEVEAISAEVRALEKELVDSDVAKVVANMSTLFSALDIAQIAQNENKPVALVAET
YFKLGAKVELHWFLEQISAQPVANHWQALARAAFREELDWQQRALSSVVLRTCSETCSAD
AIIEGWIDVNRVLLERWFHMLADFKTTQSHEFAKFSVALRELNLLILHCEGHQ
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggccttgaaagatgcaatgccttcagtactgctcgaaaacgtagtcagtttgatccat
tccaaagtccccaattcacaagcaaaacaagtcgaacagtttgcctcctgtctctatgcc
cacatgtcgaaagacgacctccacgcccgcaccgacagcgacctctacggtgccgtgctg
agtctgtggaatgcccttggcaagaccaacaccggcgaaagccatgttcgcgtgtacaac
ccgactcagtccaaacacggttggcagtcgtcacacaccatcattgaagtgatccagacc
gatatgccatttttgaccgactccctcggtatggcgctgaatcgtctgggtgttaccact
cacatgatgctgcacacgccactggcgattggtcgcagcgacaaaggcatcgacagcgtt
ggctttgttaaagacagcccggatgatgccgacaaggttgccgtattcctgattgaaatt
gaccgtcagagctctgaggccgatttgaaaaccctgctgggtgaaatccagtcggtgctg
tctgatgtaagcgctgcggtgaacgattggcaaaccatgtctgccaaactgcgctcaacc
atcgaagagctgccaaagcgtccattcccgggtaccaaggaagagcttgatgaagcggtc
gccttcctgacctatctgaataaccaccacttcacgctgcttggctatcgtcaatacgac
cttaagcgcgtggaaggtgacatggagctggtgccaaacctcgaatcgggcttaggtctg
atgaaccgccctggcaagcacaaggtcgaaggcctgatgctctccaccctgtcagacaac
gcccgtaaagaagctctggacgactcgctgctgatcctgaccaagagcagcaccaagagc
cgcgtgcaccgtccggcctatgtcgactacatcggcatcaagcgcttcgacaagaagggt
aatgtggtcggtgaagacagattcatcggtctgtacgcctcaaacctgtacaaccgcagc
ccacgtgaaatcccgctgctggcgcagaaggtgcagcgcgtgctggataactccggcctg
gtgcccaagtcgcacgactataaggcgctggtcaacattcttgaaaacctgccgcgggac
gaaatcatccaggcgagcgagcaagagctggcccacgtggcccatggcgtgctcgaaatg
caggatcgcgacaagctcaagctgtttgttcgcaaagacggttttggccgcttcctgtcc
tgtctcgtatatgtctccaaagacagatacaacaccaagctgcgtcaggacacgcagcgc
attctggcgcagcacttccagagcaaggaagaagtggaatttaccacttacttctctgag
tccattctggccagaacccactacatagtgaaagttgataacaataatatggatgtagat
gtggccgccattgaaaacaacctgattgaagccgcccgcagctgggaagacaagctgtat
acctcgctgaaccattccatgggcgaagagcagggtaatcgcttgtccaagcgttacctg
accgcgttctcacgttcttacaaagaagacgtgttgccaaacgccgctgtcgtggatatt
cagcagctcgaggccctggatgaagagcacaagcttggcatgctgttctatcagccacag
gaagcggccatcaacagcaacaaggtacgcctgaagctgttccacaaagacgagccaatc
cacctgtcggacgtactgccgatgctggaaaacttcggtctgcgggtgattaacgagcgt
ccatatgaagtgaaaacgccagacggcgccaccttctggatcctcgacttcctgatgatg
gtgaccggtggcaacaccgaaaacctagccgacagtcaggacagattccagacggcactg
gcccaggtgtggaacaagaagctggaagatgacggctttaaccgtttggtactgtctacc
ggtctggccggccgcgaagtgtctatcctgcgcgcctacgccaagtacatgcgtcagatt
gatgccaccttcagccaggcgtatatcgagcaaacctttgcccgttatcctgaaattgcc
gatttgctggtgaaaatgttcatccgcaagttcaatccaaaactgaagacccgtaccctg
accaaattccaggagcaactgaacctgcgtctggaagatgtagccagcctggatgatgac
cgcattatccgccgctatctggatctgattaacgccactgtgcggaccaacttctatcag
accaacgccgcaggcgagggcaaggattacatctccttcaagtacatcccacggatgatc
cctgagatgccaaagccgctgccggcctttgaaatcttcgtctacagcccacgggttgaa
ggcgtgcacctgcgtggtggcaaggttgcccgtggtggtctgcgttggtccgaccgccgt
gaagacttccgtaccgaagttctgggtctggtaaaagcccagaacgtgaagaacaccgtg
attgtgcctgtgggcgccaagggtggcttcgtgtgcaagcagcctccaatggatggcagc
cgtgaagccttcttcaacgaaggtcaggaatgctaccgcatctttatccgcggtctgttg
gatgtgaccgacaacatcatcaacggcgaaatcgtaccgccggtggatgtagtgcgtcac
gatgaagacgatgcttacctggtagtggccgccgacaaaggcaccgccaccttctcagac
atcgccaacgccatctctattgagtacaaccactggctgggtgatgcgttcgcatcaggc
ggttcaaacggttacgaccacaagaagatgggtatcaccgccaaaggtggttgggaatca
gttaagcgtcacttccgtgaaatcggtatcgactgccagaccaccgactttacctgtctg
ggtatcggtgacatggccggtgacgtattcggtaacggcatgctgctgtctgagcacacc
tgtctggtggctgcattcaaccacatgcacatctttatcgacccaacgccggatgccgct
gcgaccttcaaagagcgccagcgtctgttcgatttgccacgctccagctgggatgattac
aaccgtgaactcatctccaagggcggtggtatcttcttgcgcagtgccaagtccatcacc
ctgagccctgaaatgcaggcgatgctgggtactgacaagacggccatgaacccaacagag
ctcatcaaagagctgctgaagatggaagtggacctgatttggaacggcggtatcggtact
tacatcaagtcttcccgcgaaaccaacgccgaagtaggcgatcgtgccaacgacggtctg
cgtgtgaatggcggcgatgtgcgcgccaagatcatcggtgaaggtggtaacctgggttgt
acccagctgggtcgtatcgagtacgccatgaacggcggccgtatgaacaccgacttcgtg
gataacgtaggtggtgtggactgctctgacaacgaagtgaacatcaagattttgctgaac
gccatggtggccgaaggcgaaatgaccctcaagcagcgtaaccgtctgctcgaggagatg
accgatgaagtgagcgaaattgttctgcaggactgtaaagatcagacccgcaccatctct
gtgactcaggttcgtggcgccgagcagctcaaagagcaaattcgctttatccattacctg
gaaaaagaaggcaaactcgatcgcgcgctggaattcctgccgaccgacgatgaactggcc
gagcgtctggctgccggtaaaccgctgactcgcccagagctgtcagtactggttgcctac
gccaagatggtgctgaaagagcaactggttaccgctgaaatcaccgaagacagcttcctg
tccaaactgctggtgagctacttcccgcagaaactgcaggaactctatgccgacaagatg
accagccacccactgcgcggtgaaattatcgcgacatcactggccaacgagctggtgaac
gacatgggtctgaacttcgtacagcgtatgcaggatgagactggtgccacagtggccgaa
gttgccatttgctacactatggctcgcgaagtctttggtttggctcagcttaccatggct
atcagcgcgcagaatggcgtggtgcctgccgtggttcaactggaaatgctgcatcagttg
cgtcgtaacgtgcgccgtgcctgtcgctggttcctgcgtcacagaaaccgcaacaacagc
atcgagcagacagttgccttcttcaagcctgtgttcgacgaactcaaggccaacgttcac
cagtacatggtggctgaagaagtggaagccatcagcgccgaagtaagggcgttggagaaa
gagctggtagacagcgatgtagccaaggttgtggccaacatgagcaccctgttctcggcg
ctggacattgcccagatagctcagaacgaaaacaagccggtagccctggttgccgagact
tacttcaagctgggtgccaaggttgaactgcactggttcctcgagcagatcagtgcccaa
cctgtggccaaccactggcaggctctggcccgtgccgccttccgcgaagagctggattgg
cagcagcgcgccctgagttctgtggtattgcgtacctgcagtgaaacctgcagcgccgat
gccatcatcgaaggctggatcgatgttaaccgggtactgctggagcgctggttccacatg
ctggctgacttcaagacaacgcaaagccatgaatttgccaagttctcggtggctctgcgt
gagctcaacctactgatcctccactgcgaaggtcaccagtaa
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