Shewanella khirikhana: STH12_01526
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Entry
STH12_01526 CDS
T06711
Symbol
nth
Name
(GenBank) Endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
skh
Shewanella khirikhana
Pathway
skh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STH12_01526 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skh03400
]
STH12_01526 (nth)
Enzymes [BR:
skh01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
STH12_01526 (nth)
DNA repair and recombination proteins [BR:
skh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
STH12_01526 (nth)
Prokaryotic type
STH12_01526 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AZQ10635
LinkDB
All DBs
Position
1739084..1739725
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AA seq
213 aa
AA seq
DB search
MNNQKRVEILTRLRDNNPKPETELNFSTPFELLVAVTLSAQATDVSVNKATDKLFPVANT
PQAIVDLGVEGLKEYIKTIGLFNNKAINVVKLSQILLDKHGGEVPEVRDALEALPGVGRK
TANVVLNTAFGWPTIAVDTHIFRMANRTKFAPGKNVVEVEERMLKVVPAEFKVDVHHWFI
LHGRYTCLARKPRCGSCIIEDLCEFKDKVYPDE
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
gtgaataatcaaaagcgtgttgaaattctgacgcgtcttagggacaacaaccccaagccg
gaaaccgagcttaacttttccacaccgtttgagctgctggttgcggtcaccctctctgct
caggctaccgatgtgagtgtaaacaaggcaaccgacaagctgtttccggtggctaacact
ccgcaggccatagtggatttgggcgttgagggactgaaggagtacatcaaaaccatcggc
cttttcaacaacaaagccatcaacgtggtgaagctgtcacaaattctgctggataagcac
ggcggcgaagtgccggaagttcgtgacgcgctggaggccctgccgggcgttggtcgcaag
accgccaatgtggtgctcaataccgctttcggctggccgaccatcgccgtggacacccac
atttttcgcatggcaaaccgcaccaaatttgccccaggcaaaaacgtggtggaagtggag
gagcggatgctgaaggtggtgccggccgagtttaaagtagatgtgcaccactggtttatt
ctgcacggacgctacacctgccttgcccggaagcctcgctgcggcagctgcatcatcgaa
gatttgtgcgaattcaaggacaaggtttaccccgacgagtaa
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