Streptococcus koreensis: D7D50_07100
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Entry
D7D50_07100 CDS
T06405
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ski
Streptococcus koreensis
Pathway
ski03030
DNA replication
ski03410
Base excision repair
ski03420
Nucleotide excision repair
ski03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ski00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D7D50_07100 (ligA)
03410 Base excision repair
D7D50_07100 (ligA)
03420 Nucleotide excision repair
D7D50_07100 (ligA)
03430 Mismatch repair
D7D50_07100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ski03032
]
D7D50_07100 (ligA)
03400 DNA repair and recombination proteins [BR:
ski03400
]
D7D50_07100 (ligA)
Enzymes [BR:
ski01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D7D50_07100 (ligA)
DNA replication proteins [BR:
ski03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D7D50_07100 (ligA)
DNA repair and recombination proteins [BR:
ski03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D7D50_07100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7D50_07100 (ligA)
MMR (mismatch excision repair)
DNA ligase
D7D50_07100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D7D50_07100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Relaxase_C
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
AYF94370
UniProt:
A0ABN5PVX0
LinkDB
All DBs
Position
1417585..1419543
Genome browser
AA seq
652 aa
AA seq
DB search
METRIKELVTLLNHYAEEYYTKDAPSVSDYEYDQLYRELVTLEEAHPELVQPNSPTHRVG
GTILKGFEKYQHTYPLYSLQDAFSYDELVAFDQRVRKEFPAVTYVCELKIDGLSISLSYV
DGVLETGATRGDGSIGENITENLKRVRDIPLVLPEPLTLTVRGECYMPRASFDAVNLSRQ
ENGEAEFANPRNAAAGTLRQLDTKIVAERKLATFLYQEASPTDQTSQEKVLAKLDRLGFV
VNPHHKTATSIEQVWDYIQEVAAMRDQLPYDIDGVVIKVNDLAVQEELGFTVKAPKWAVA
YKFPAEEKEAKLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVMDKRVSEEKLEIPSHCPSCQSELLHFEDEVALRCINPRCPA
QIKEGLAHFASRDAMNITGLGPAVVEKLFAKELVQDVAGIYRLTVEDLLQLEGFKEKSAQ
KLVDAIQASKGNSAEKLLFGLGIRHVGSKASQLLLQEFHSIPALAEAEVETIAAIDSLGM
VVAESLQRYFAQEGSRLLLEELKDAGVNLEYLGQKVAADAPLSGKTVVLTGKLERLTRSE
AKAKLEALGAKVTGSVSKKTDLLVAGSDAGSKLSKAQELSIEIQDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccagaataaaagagctagtgacactcctgaatcactatgcagaagaatattat
acaaaagatgctccgtccgtatcggattatgagtacgatcaactttatcgggaattagtc
accttagaggaagcccatccggagttggtccagcccaatagcccaacccatcgggtcgga
ggaactattcttaaagggtttgaaaaataccagcatacctacccgctttatagcttacag
gacgccttttcttatgatgaattagtggcctttgatcaacgggttcgcaaggaattccct
gctgtcacctatgtatgtgaattaaaaattgacggcctgtctatttcactttcttatgtt
gatggagttcttgaaacgggtgctacacgtggggatgggagcattggagaaaatatcaca
gaaaaccttaagcgagttcgtgatattcctctagtcttgccagaacctcttacattaaca
gttcgcggagaatgttatatgccccgtgcatcttttgatgctgtcaacttgtctcgccaa
gaaaatggggaagcagagtttgcgaatcctcgaaatgcggcagccggtactcttagacag
ttggatacaaagattgttgcggagcgaaaactcgcgaccttcctctatcaagaagctagt
ccaactgaccaaacgagtcaagagaaggtgttagccaagttagatcgactcggttttgtc
gtcaatccgcatcacaagacagcgactagtatcgagcaagtctgggactatattcaagaa
gtggcagccatgcgtgaccagcttccttatgatatcgatggggtcgtgataaaagtgaat
gacctggctgtccaagaagaacttggctttactgtcaaagctcccaaatgggcagtggct
tacaagttcccagctgaggagaaggaagcaaaactcttgtcagttgattggactgttggt
cggacaggagtggtgacaccaactgctaatttgactcccgttcaactagcagggacgact
gtcagtcgggctactctccataatgtagattacattgctgagaaagatattcgcaaagac
gataccgtcattgtctataaagcaggggatattattccagctgttctacgggttgttatg
gataagcgcgtatcagaagaaaaattagagattcccagtcactgtccaagttgtcagagt
gagctccttcattttgaggatgaagtggccttgcgttgtatcaacccccgttgtcctgct
caaataaaggaagggctcgctcactttgccagccgggatgccatgaatataacagggttg
gggccagctgtggtggaaaaactgtttgccaaagaactggtacaggatgtggcaggtatc
taccggctgacagttgaggatcttttgcaattagaaggttttaaagaaaaatctgcccag
aagttagtagatgctattcaagcatctaaggggaattctgctgaaaaactattgtttgga
ctgggaattcgtcatgtaggaagtaaggccagccagctcttgctccaagagtttcattcc
attccagctttagcagaagcagaggttgaaacgattgcagcgatagacagtttaggaatg
gtcgttgcagaaagtctccagcgttattttgctcaggaaggctctcggcttcttttagaa
gagcttaaggatgctggggtaaacttagagtacctaggacaaaaggttgcagcagacgca
ccattgtccggtaaaacagtcgtcttaacaggtaaactggaacgtctgacacgttctgaa
gctaaggctaaattagaagccttaggggctaaagtcacaggctccgtgtccaagaaaact
gacctgttggttgcaggtagcgatgcgggaagtaaattaagcaaagcgcaggaattatcg
attgaaatacaggatgaagcctggcttgagagtttatag
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integrated database retrieval system
