Spiroplasma kunkelii: SKUN_001484
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Entry
SKUN_001484 CDS
T04056
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
skn
Spiroplasma kunkelii
Pathway
skn03030
DNA replication
skn03410
Base excision repair
skn03420
Nucleotide excision repair
skn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
skn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SKUN_001484 (ligA)
03410 Base excision repair
SKUN_001484 (ligA)
03420 Nucleotide excision repair
SKUN_001484 (ligA)
03430 Mismatch repair
SKUN_001484 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skn03032
]
SKUN_001484 (ligA)
03400 DNA repair and recombination proteins [BR:
skn03400
]
SKUN_001484 (ligA)
Enzymes [BR:
skn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SKUN_001484 (ligA)
DNA replication proteins [BR:
skn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SKUN_001484 (ligA)
DNA repair and recombination proteins [BR:
skn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SKUN_001484 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SKUN_001484 (ligA)
MMR (mismatch excision repair)
DNA ligase
SKUN_001484 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SKUN_001484 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ALA98343
UniProt:
A0A0K2JIT9
LinkDB
All DBs
Position
complement(1251707..1253710)
Genome browser
AA seq
667 aa
AA seq
DB search
MTFEQAKKRSLVLKEQLEQWNYEYYVNDNPSVSDQEYDRAMQELIAIEQRYSELITIDSP
TQRVYGQVSEKFNKYIHTSPMLSLGNAFNYDDLIHFDEQIKELTGLPEVEYTCELKIDGL
SISLVYDNHLLLMGATRGDGITGEDVTINIKQIKSIPLRIVQPTLTVRGEVYLSVEEFKK
INEERAKNGESEFANPRNVAAGTLRQLDSTIVAKRKLNAFLYYYVNALQDGIQSQYEALQ
RLEQLKFKTNSEYRYCSNIAAVWAYIQEYEPKRHQLGYEIDGIVIKVNNLNLYNRIGYTA
KNPKWAIAYKFPAEVVVTKLLNIFPSVGRTGRITYNAVLEPVRIAGTIVRAATLHNADFI
TERDIRIGDNVQVKKAGDIIPEVINYVAACRPKNTQKWHEATHCPECNSLLERVEGEVDQ
YCINSVCPKKITRALEHYCSRNAMNIEGVSEKIIERLFKLGYLKSFSDLYQLEQYRAEII
ELENFGEKSFENMIASINNSKNNSLERLLFALGIRHVGQKTAKLLARQFKTISNLAAMNI
EQLSIINDIGPIVAASVVDYFAIPDNQQELNLLRQKGVKIEYYATNQHLAQKFENYRFVI
TGVLSKPREYFKELIESYGGQISESVSAKTTYLLAGADAGNKLVKAQKLNVKIINEEEFQ
QLLNKEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaacaagcaaaaaaacgtagtttagtattaaaagagcagttagaacaatga
aattatgaatattatgtgaatgataaccctagtgtcagtgatcaagaatatgatcgagca
atgcaagaattaattgcaattgaacaacgatatagtgaattaattacaattgattctcca
acgcaacgtgtttatggtcaagttagcgaaaagtttaataaatatattcatacaagtcca
atgttaagtttgggaaacgcatttaattatgatgatttaattcattttgatgaacaaatt
aaagaattgactggtttgccagaggttgaatatacttgtgaattaaaaattgatggatta
tcaatttcattagtttatgataatcatcttttattgatgggggcaactcgtggagatggt
attactggtgaagatgttactattaatattaaacaaattaaatcaattccgcttcgaatt
gtccaaccaactttaactgttcgaggtgaagtttatttatcagttgaagaatttaagaag
ataaatgaggaacgtgcaaaaaatggcgaatctgaatttgctaatcctcgaaatgtagca
gcaggaactttgaggcaattagattcaacaattgttgcaaaacgaaagttaaatgcattt
ttatattattatgttaatgctttgcaggatggaattcaatcacagtatgaagcgttacaa
agattagaacaattaaaatttaaaacaaattctgagtatcgttattgttcaaatattgcg
gcagtgtgagcatatattcaagagtatgaaccaaaacgtcatcaattaggttatgaaatt
gatggaattgtgattaaagttaataacttaaatttatataatcgcataggttatactgct
aaaaatccaaaatgagcaatagcttataaatttccagcagaagttgtggttacaaaattg
cttaatatttttccttctgttggaagaacaggacgtattacttataatgctgttcttgag
ccagttcgtattgcaggaacaattgtacgagcagcaacattacataatgctgattttatt
actgagcgtgatattcggattggtgataatgttcaagttaaaaaagcgggggatattatt
ccggaagtgattaattatgttgcagcttgtcgcccaaaaaatactcaaaaatgacatgag
gcaacacattgtccagaatgtaattctttattagaacgtgttgaaggtgaggttgaccag
tattgtattaattctgtttgtcctaaaaaaattactcgggcgttagaacattattgttca
cgaaatgcgatgaatattgaaggagttagtgaaaaaattattgaacgattatttaaatta
ggatatttaaaaagttttagtgatttatatcaattagagcaataccgagcggaaattatt
gaattagaaaattttggtgaaaaatcatttgaaaatatgattgcttcaattaataattca
aaaaataattccttagagcgactattgtttgcattaggaattcgacatgttggtcaaaaa
acagcaaaattattagcacgacaatttaaaacaatttctaatttagccgccatgaatatt
gaacaattatcaattattaatgatattggtccaattgtagcagctagtgttgttgattat
tttgcaattccagataatcaacaagaacttaacttactacgccaaaaaggggttaaaatt
gagtattatgctactaatcagcatttagcacagaagtttgaaaattatcggtttgtgatt
accggagttttgtcaaaaccacgagaatattttaaagagttaattgaaagttatggtggg
caaatttctgaaagtgttagtgcaaaaaccacttatttattggcgggggctgatgctggt
aataaattagtaaaagcacaaaaattaaatgttaaaattattaatgaagaagaatttcaa
caattattaaataaggagggataa
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