Saccoglossus kowalevskii (acorn worm): 100372970
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Entry
100372970 CDS
T04123
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko04120
Ubiquitin mediated proteolysis
sko04140
Autophagy - animal
sko04144
Endocytosis
sko04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
100372970
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100372970
04140 Autophagy - animal
100372970
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
100372970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sko04131
]
100372970
04121 Ubiquitin system [BR:
sko04121
]
100372970
Enzymes [BR:
sko01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100372970
Membrane trafficking [BR:
sko04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
100372970
Ubiquitin system [BR:
sko04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
100372970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
TRAF3_RING
zf-C3HC4_3
zf-RING_5
zf-Nse
RING_XB3-XBAT31
U-box
zf-RING_6
DUF641
BRE1
Med28
zf-RING_11
SlyX
Motif
Other DBs
NCBI-GeneID:
100372970
NCBI-ProteinID:
XP_006816048
LinkDB
All DBs
Position
Un
AA seq
555 aa
AA seq
DB search
MEEADESVGYDMEFVPPLESKYECPICLMALREPTQTQCGHRFCRSCICQSMRETGSKCP
IDNTPLSFSSLFPDNFAKREILGLRVKCPNPGCTFVFELRNLEEHNLKCDFYQEQCGLNC
GLLIHRKSMEIHQKNECAKRLVSCEYCFIRIAFDEQENHLKECLKFPVVCQYCQMQLTRE
ELAGHIEKDCFEVIVSCSYANMGCKEKMTRRDMLMHEKNSLVIHLQYVASTLNEMRIKSK
RQLEKPETETFYHSWHTDGCKTDNEEGVTYSTSFSDPPSFTNKEPSGAYALEHSAFDFAI
PDREPMRKFLPKTFNSNRSRQFSPATSHRSARHHDDIQSQYSTQTMSHMDLSILAERMRY
QEGHIATQEQKILELQAKLESRDKEVKELTQKISRWEAIVMSNGIYYWKFENYTELQTIT
RSGETSVVHSPGFYTGYYGYKLCLRVNLNGIDSAHSSHVSLFVHFMQGEWDDFLDWPFSG
KITLTILDQNEDTRVRNHISETLIAKPALAAFHRPKTNRNHKGFGYMEFAPLRTIHAGHY
IKENCLLIKAVVHSN
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagccgatgaaagtgttggttatgatatggaatttgttccaccattggagtcc
aagtatgaatgcccgatttgtttgatggcattgcgtgaaccaactcaaacacagtgtgga
catcgtttctgtcgcagttgcatctgtcagtcaatgagagaaacaggttcgaaatgtcca
atagataacacaccactgtctttcagttcgctgtttcctgataattttgcaaagcgagag
atactaggtttgagggtgaaatgtcccaatcctggctgcacgtttgtgtttgaactgaga
aatttagaggaacacaatctgaaatgtgatttttatcaagaacagtgtggcttgaactgt
ggtcttctgatccatcgaaaatccatggaaattcatcagaaaaatgaatgtgctaaaagg
ctggtgtcatgtgaatattgctttataaggatagcatttgacgaacaagagaatcacttg
aaagaatgtctcaaatttccagtagtgtgtcaatattgccagatgcagttaacaagagag
gaattagcaggtcacatcgagaaagactgttttgaagttatcgtttcttgctcctatgcc
aatatgggctgtaaagaaaagatgacaagacgagatatgctgatgcatgaaaaaaactct
ttggtgatccatttacagtatgttgcatctaccctgaatgaaatgaggataaagtcaaaa
cgacaattagagaaaccagaaacagaaactttttaccattcttggcacaccgatggttgt
aaaactgataatgaagaaggagttacctattctacatcattcagtgatccccctagtttt
accaataaagagccatcaggtgcatatgccttggaacacagtgcttttgactttgcaata
ccagatagggaaccgatgaggaagtttttacctaaaacatttaatagtaataggtctagg
cagttttcaccagccacaagtcatagatcagcacgtcaccatgacgatattcaatcacag
tattctacccagaccatgtcacatatggacttatcaatactggctgagagaatgagatat
caagagggtcacatcgcaactcaagaacaaaaaattttggaattacaggctaaacttgaa
agccgagacaaagaagtgaaggaactgacacaaaaaataagtcgttgggaagcaattgtt
atgagcaatggtatttattactggaagtttgagaattacacagagctgcaaaccatcaca
agaagtggtgaaaccagcgttgtgcatagccctggattttatactggttactatggctac
aagctatgtttacgtgtgaatctaaatggaatcgattcagcccacagttctcatgtttca
ttgtttgtacactttatgcagggggagtgggacgatttcttggattggccattctctggt
aaaattacactgactattttggaccagaacgaggatacaagggttcgtaatcacatcagt
gaaaccctgattgcaaaaccggcattggccgcatttcatagaccgaaaaccaaccgcaac
cacaaaggatttgggtacatggaatttgctcccttgagaacgattcacgctggacactac
attaaagaaaactgtcttcttatcaaggcggttgtacattcaaattga
DBGET
integrated database retrieval system
