Saccoglossus kowalevskii (acorn worm): 100378261
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Entry
100378261 CDS
T04123
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100378261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sko03041
]
100378261
Spliceosome [BR:
sko03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100378261
Complex C
U5 SnRNP specific factors
100378261
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Roc
jr-ZPR1
Motif
Other DBs
NCBI-GeneID:
100378261
NCBI-ProteinID:
XP_002732943
LinkDB
All DBs
Position
Un
AA seq
971 aa
AA seq
DB search
MDADLYDEFGNYIGPELASDSDDDAADHDDQRYEFEAAEDDIDEPMEHDVPTQAIILHED
KKYYPTSEEIYGPEVETIIQEEDTQPLTEPIIAPVKVKKFSLVEQELPVTTYDSEYLADL
MDNAELIRNVTLAGHLHHGKTAFVDCLLEQTHPELRTKEDKRLRYCDTLFTEVERGVSIK
ATPVTLVLQDTREKSYLMNVFDTPGHVNFSDEATAAFRLSDGAIIFVDAAEGVMLNTERL
IKHAVQEGIAVCICINKIDRLMLELKLPPTDAYYKLRHIVDEVNALLSTYSETDNEYQVS
PLLGNVCFASSQYAFCFTLASFAKLYENTYGGVNYLEFSKRLWGDIYFHSKTRKFTKKPP
HSSAQRSFVEFILEPLYKLFAQVVGDVDSTLPGVLDELGIKLTKEELKMNIRPLMRLVCK
KFFGDFTGFVDMCVHHVKSPVGYAKNKIDQIYTGPLDTDLADSMIDCDQEGPLMVHITKM
YSTEDGVSFHAFGRIMSGTLHANSDVRVLGENYTLEDEEDSRICQIGRLWISEARYKIEV
NRVPAGNWVLIEGIDQPIVKTATITEARGNEEAYIFKPLKFNTSSVIKIAVEPVNPSELP
KMLDGLRKVNKSYPLLTTKVEESGEHVVLGTGELYLDCVMHDLRKMYSEIDIKVADPVVS
FCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENEVVQITWNRKRLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKGLLNSVKDSIIQGFQWGTREGPLCD
EPIRNVKFKILDAVIAGEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFLPTIDSFGFETDLRTHTQGQAFCLSVF
HHWQIVPGDPLDKSIVIRTLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDPMLLEL
ARQDVMQNYPV
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgacttgtatgacgaatttggtaattatattggtccagagttggccagtgat
tccgacgacgatgctgctgatcatgacgatcaacgatatgaatttgaagcggctgaagac
gacattgatgaaccaatggaacatgatgtacctacacaagctataattcttcatgaagat
aagaaatattatccaacatcagaggaaatctatgggccggaggtagaaaccattatacag
gaagaagacacgcaaccgcttactgaacccattatagctcctgtaaaggttaaaaagttt
tctcttgtagaacaagaattaccagtgactacctacgactcagaatatttagcagacctg
atggacaatgcagagttgattcgtaatgttacacttgctggtcacttacaccatggtaaa
actgcatttgttgattgtctattggaacaaacacatccagagttgcgtactaaggaagac
aaaagattgagatactgtgataccctcttcacagaagttgagagaggtgtgagtataaaa
gctactccagttactttagtacttcaagacactcgtgaaaaatcttatctgatgaatgtt
ttcgacactccaggtcatgtgaatttctctgatgaagcaaccgctgcatttcgactttcg
gatggtgccatcatctttgtggatgctgcagaaggagtaatgcttaacacagaacgcctc
ataaaacatgccgtgcaagaaggcatagctgtgtgtatatgtattaataaaatagataga
ctgatgttagaattgaagttaccacccactgatgcatattataaattaagacatattgtg
gatgaagtgaatgctttgttaagtacatactccgaaactgacaacgagtaccaagtgtca
ccattactgggtaacgtctgctttgccagttcacagtatgcattttgttttacactggcg
tcatttgcaaagctctacgagaacacctatggtggcgtcaattatctggaattttcaaag
agattatggggtgatatatattttcattcaaaaacgcgcaagtttaccaagaaaccacct
cacagttcagcacagagaagttttgtagaatttatcttggaaccattatacaaactattt
gcacaagttgtaggtgatgtagattctacactgccgggtgtactggatgaacttggtatt
aaacttaccaaggaagaacttaagatgaatatccgaccattaatgagactagtctgtaag
aaattctttggtgactttacaggctttgttgatatgtgtgttcatcatgtcaaatctcct
gttggttatgctaaaaataaaatagaccaaatctacacgggaccattagatactgatctg
gcagattccatgatagattgtgatcaagagggaccattaatggtgcatataacaaaaatg
tacagtacagaagatggtgtaagtttccatgcatttggacgtattatgagtggcacgttg
catgctaattcagatgtacgtgtcctcggtgaaaactatacactagaagatgaagaagac
tcacgaatatgtcagattggtagactatggatatctgaagcaagatataaaattgaagta
aatagagtgcctgctggtaactgggttctcatagagggaatagatcaacctatagttaag
actgctactattactgaagccaggggaaatgaagaggcatacattttcaaaccattaaag
ttcaatacaagttctgttatcaagatagctgtggaacctgtcaatccatcagagttaccc
aaaatgttagatggattaagaaaagtcaataaaagttatcctttattaactactaaggta
gaagagtctggtgaacatgttgtcctgggaactggtgaactttacctagactgtgtcatg
cacgatttaagaaaaatgtattctgaaattgatatcaaggttgctgatccagttgtgtca
ttctgtgaaactgttgtggagacatcatcactcaaatgttttgctgaaacgccaaacaaa
aaaaataaattaacaatgattgctgagccacttgagaaagggttagctgaggatattgag
aatgaagttgttcagatcacatggaataggaaacgtcttggcgaattcttccagactaaa
tatgattgggatttgttagctgcacgttctatttgggcatttggtccagacactacaggt
cctaatattctggtggatgacacactcccttcagaggttgacaaaggtttgttaaattct
gtcaaagacagtattatacaaggattccagtggggtacacgagaaggaccactctgtgat
gaaccaattcgaaatgtcaagttcaagattttagatgcagtaattgcaggggaacctcta
caccgtggtggtggtcaaattattcctaccgctagacgtgttgcatactctgcatttctt
atggcaactccacgtttaatggagccttactattttgtggaagtgcaggcccctgcagat
tgcgtgtctgcagtatatacagtactggcaagaagaagaggtcatgtgacccaagatgca
ccaattccaggttcacctttgtacactattaaggcgtttctaccgacaattgattcattt
ggatttgaaactgatctacgtacacacacacagggacaagctttttgcttatctgtcttc
caccattggcagatcgtcccaggagatcctttagataaaagtattgttattaggactcta
gaaccacagccagcaactcatttagccagagaatttatgattaaaaccagaagaaggaag
ggtctaagtgaggatgtcagtatcaacaaattctttgatgatcccatgttgttggaattg
gcacgtcaagatgtcatgcagaattaccctgtataa
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