Salinivibrio kushneri: FCN78_03850
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Entry
FCN78_03850 CDS
T05956
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03030
DNA replication
sks03410
Base excision repair
sks03420
Nucleotide excision repair
sks03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCN78_03850 (ligA)
03410 Base excision repair
FCN78_03850 (ligA)
03420 Nucleotide excision repair
FCN78_03850 (ligA)
03430 Mismatch repair
FCN78_03850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sks03032
]
FCN78_03850 (ligA)
03400 DNA repair and recombination proteins [BR:
sks03400
]
FCN78_03850 (ligA)
Enzymes [BR:
sks01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCN78_03850 (ligA)
DNA replication proteins [BR:
sks03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCN78_03850 (ligA)
DNA repair and recombination proteins [BR:
sks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCN78_03850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCN78_03850 (ligA)
MMR (mismatch excision repair)
DNA ligase
FCN78_03850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCN78_03850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCP01606
LinkDB
All DBs
Position
1:790218..792227
Genome browser
AA seq
669 aa
AA seq
DB search
MAYSKQQLDDLKHQLNYHAYRYYVEDSPELPDAEYDRLMQDLLAIEAAHPEWITSDSPSQ
RVGGAPLSAFETVTHELAMLSLGNAFSDDDLADFERRVKDRLGDGEPVTYTCEPKLDGLA
VSLIYENGELVQAATRGDGTTGENITHNVKTIRNVPLTLQKGDWPTRLEVRGEVFMPKAG
FEALNEAALKKGDKTFANPRNAAAGSLRQLDPKIAANRPLSFYAYAVGVMSTPFGQGQSE
RLQKLKQWGLALSPEVKRVEGLDGVKAYYQDIMARRDALPYEIDGVVIKVDSIASQERLG
FVARAPRWAIAYKFPAQEEITTVNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNG
DEIERLGVHIGDTVVIRRAGDVIPQVVGVVESRRPDQAQPIVFPDACPVCDSAVTRIEGE
AVARCTGGLICLAQRKEAIKHFASRKAMDIDGLGDKIVEQLIEKELIETPADLFTLTPGR
VTQLDRMGPKSAQNLVDALEKAKATTLPRFIYALGIREVGEATAQNLALHFHTLDALRAA
DEEALINVPDVGAIVAGHIVRFFAEPHNQSVLEALLATGIHWPEISAPSEPDAQPLAGKT
IVLTGTLSQMSRSDAKAALQALGAKVTGSVSAKTDMLVAGEAAGSKLTKAQDLGVTVLDE
DQMIAMLNQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcttacagcaaacaacaactcgatgatttaaagcaccagcttaactatcacgcctac
cggtactacgttgaagacagcccagagctgcccgatgccgagtacgaccgcctgatgcaa
gacttattggccattgaggcggcacaccctgaatggataactagcgactcaccgagtcag
cgagtcggtggcgcaccgcttagcgcgtttgagacggtcacccacgagttggcgatgtta
tctttggggaatgccttcagtgatgacgatctggctgactttgaacgccgtgttaaagat
agactcggtgatggcgagccggtcacctacacctgtgagcccaagctcgatggtttagcg
gtgagcctgatttacgaaaatggtgagctggttcaagctgcgacgcggggagatggcacc
accggcgagaacatcacccacaacgtcaaaaccattcgcaacgtcccccttaccttacag
aaaggggattggccaacgcggctcgaagtgcgtggtgaggtcttcatgccgaaagcgggc
ttcgaggcacttaacgaggccgcgcttaaaaaaggcgataaaacctttgccaacccgcgc
aatgcggcggcaggcagcctgcgtcaactggaccccaaaatcgccgctaaccgaccattg
agtttctatgcctatgcggtgggcgtgatgtcgactcccttcggccaagggcaaagtgag
cgcttacagaagctcaaacagtggggcctagcgctcagtccagaagtgaaacgggtggaa
ggcctagacggcgtgaaagcctactaccaagacattatggcgcgccgtgatgcactgccc
tacgaaatagacggtgtcgtcatcaaagttgacagcattgccagccaagaacggttaggg
tttgtggcgcgcgcgcctcgttgggcgatagcttacaaattcccggcgcaagaagaaatc
accactgtcaacgatgtggagttccaagtgggccgcactggggccattacgccagttgcc
aagcttgagcctgtgttcgtgggcggcgtcacggtcagtaatgccaccttgcacaacggt
gatgaaatcgaacggttaggcgttcatattggtgatactgtggtgatccgccgtgccggt
gatgtcatccctcaagttgttggtgtggtggaaagccggcgtcctgatcaggcacaacca
atagtgtttcccgatgcgtgtccggtctgtgattcagcggtgacccgtatcgagggggaa
gcggtcgcacgctgcaccggcggattaatttgtctggcacagcgcaaagaagcgattaaa
cactttgcgtctcgtaaagccatggatattgatggcttgggcgataaaatcgtcgagcag
ttaatcgaaaaagaactgattgagacgccagccgatctctttaccttgacgcccggtcgg
gtgacgcagctcgacagaatggggccaaaatcagcgcaaaacttggttgatgcactggaa
aaagccaaagccaccaccttgccacgctttatttatgccttgggcattcgtgaagtgggc
gaggcgaccgcgcaaaatctcgctttgcactttcataccctcgacgcgttgcgcgcggcc
gatgaagaggctctcattaacgtgccggacgtgggtgcgattgtcgcaggccacatcgtt
cgcttctttgccgagccgcacaaccagagtgtgctagaagccctactggcaactgggatc
cactggcccgaaatcagcgcgccgtcagagccagatgcgcaaccgttagccggtaaaacc
attgtcctgacgggcaccttatcgcaaatgtctcgcagtgatgccaaagcggcgttacag
gcgttgggcgcgaaagtgacgggcagtgtctcggcaaaaaccgacatgttagtggcgggg
gaggccgcaggctccaaactcaccaaagcgcaagatctgggcgtcactgtactcgatgaa
gatcaaatgattgccatgcttaatcagtag
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