Streptomyces koyangensis: D0C37_08230
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Entry
D0C37_08230 CDS
T06436
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sky
Streptomyces koyangensis
Pathway
sky03030
DNA replication
sky03410
Base excision repair
sky03420
Nucleotide excision repair
sky03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0C37_08230 (ligA)
03410 Base excision repair
D0C37_08230 (ligA)
03420 Nucleotide excision repair
D0C37_08230 (ligA)
03430 Mismatch repair
D0C37_08230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sky03032
]
D0C37_08230 (ligA)
03400 DNA repair and recombination proteins [BR:
sky03400
]
D0C37_08230 (ligA)
Enzymes [BR:
sky01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D0C37_08230 (ligA)
DNA replication proteins [BR:
sky03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D0C37_08230 (ligA)
DNA repair and recombination proteins [BR:
sky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D0C37_08230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D0C37_08230 (ligA)
MMR (mismatch excision repair)
DNA ligase
D0C37_08230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D0C37_08230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AXQ54586
UniProt:
A0A385D899
LinkDB
All DBs
Position
complement(1971503..1973689)
Genome browser
AA seq
728 aa
AA seq
DB search
MAGEQQNADVPADARERHKHLAEQVEEHRFRYYVNDQPVVSDAEFDRQLRALTELEERYP
PLRTPDSPTQKVAGQYETEFTSVQHRERMLSLDNAFDDEELAAWAERVAKEVGAPGYHFL
CELKVDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTISDIPERLHGDDLPALVEIR
GEVFFPMEEFEKLNARLVEAGEKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGARE
GFTVDCLSHAYDLLRSWGLPTARHNKVVEGLDGVREFIKYYGDHRHSVEHEIDGVVVKLD
EVPLQGRLGSTSRAPRWAIAWKYPPEEVNSRLIDIRVGVGRTGRVTPYAQVEPVTVAGSE
VEFATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGTERPFTMPAECPECG
TPLKPMKEGDIDLRCPNARSCPAQLRERIYYLAGRKCLDIENFGYVAATALTQPLEPSEP
PLRDEGDLFDLTVDQLLPIRSYVLDPDSGLPKRDPKTGEEKIVTFFANKQGEAKKNTLAM
LEHIEAAKQRPLARVLTGLSIRHVGPVAAQALAREFRSIERIEAATEEELAQTEGVGPTI
AASLKNWFAEEWHREIVRKWREAGVRMEEESTGEDEGPRPLEGLTVVVTGTLEHHTRDNA
KEALQNQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQAKVPVLDEAGFAVLLEQGPDAAR
EVALPLPE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagaacgcagacgttcccgcggacgcgcgggagcgccacaagcac
ctcgccgaacaggtcgaggagcaccgcttccgctactacgtcaacgaccagcccgtcgtc
agcgacgccgagttcgaccggcagctgcgcgccctcaccgagctggaggagcggtacccg
ccgctgcgcacccccgactcgcccacccagaaggtcgccgggcagtacgagacggagttc
acctccgtccagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggaa
ctcgccgcctgggccgagcgcgtcgccaaggaggtcggcgcccccggctaccacttcctg
tgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcacggccgcctcacc
cgcgccgccacccgcggcgacggccgcgtcggcgaggacatcacccccaacgtccgcacc
atctcggacatccccgagcggctgcacggcgacgacctccccgccctggtcgagatccgc
ggcgaggtcttcttcccgatggaggagttcgagaagctcaacgcccgcctcgtcgaagcc
ggcgagaagcccttcgccaacccgcgcaacgccgccgccggctccctgcgccagaaggac
ccccgggtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgcccgcgag
ggcttcaccgtcgactgcctctcccacgcctacgacctgctgcgctcctggggcctgccc
accgcccgccacaacaaggtggtcgaagggctcgacggcgtccgcgagttcatcaagtac
tacggcgaccaccggcactccgtggagcacgagatcgacggcgtcgtcgtcaagctcgac
gaggtccccctccagggccgcctcggctccacctcccgcgccccccgctgggccatcgcc
tggaagtacccgcccgaggaggtcaacagccgcctgatcgacatccgcgtcggcgtcggc
cgcaccggccgcgtcaccccgtacgcccaggtcgagccggtcaccgtggccggctccgag
gtcgagttcgccaccctgcacaaccaggacgtggtccgcgccaagggtgtcctcatcggc
gacaccgtcgtcctgcgcaaggccggcgacgtcatcccggagatcctcggccccgtcgcc
gacctccgcgacggcaccgagcgccccttcaccatgccggccgagtgccccgagtgcggg
acgccgctgaagccgatgaaggagggcgacatcgacctccgctgccccaacgcccgctcc
tgccccgcccagttgcgcgagcggatctactacctcgccggccgcaagtgcctcgacatc
gagaacttcggctacgtcgccgccaccgccctcacccagccgctggagccctccgagccc
ccgctgcgcgacgagggcgacctcttcgacctcaccgtcgaccagctcctgcccatccgc
tcctacgtcctcgacccggacagcggcctgcccaagcgcgacccgaagaccggcgaggag
aagatcgtcaccttcttcgccaacaagcagggcgaggcgaagaagaacaccctcgccatg
cttgagcacatcgaggccgccaagcagcgccccctcgcccgcgtcctcaccggcctctcc
atccgccacgtcggcccggtcgccgcccaggcgctggcccgcgagttccgctccatcgag
cggatcgaggccgccaccgaggaggagctggcccagaccgaaggcgtcggcccgaccatc
gccgcctccctcaagaactggttcgccgaggagtggcaccgcgagatcgtccgcaagtgg
cgcgaggccggcgtccggatggaggaggagtccaccggcgaggacgagggcccccgcccg
ctggagggcctcaccgtcgtcgtcaccggcaccctcgaacaccacacccgggacaacgcc
aaggaagccctccagaaccagggcgccaaagtgacaggttctgtctcgaagaagacttcg
ttcgtggtcgtcggcgacaaccccggctccaagtacgacaaggccatgcaggccaaggtg
cccgtcctggacgaggcgggcttcgccgtcctcctcgaacaaggccccgacgccgcacgt
gaagtggcacttccgcttcccgagtga
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