Sulfurimicrobium lacus skT11: SKTS_10420
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Entry
SKTS_10420 CDS
T06796
Symbol
sucB
Name
(GenBank) dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
KO
K00658
2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:
2.3.1.61
]
Organism
slac
Sulfurimicrobium lacus skT11
Pathway
slac00020
Citrate cycle (TCA cycle)
slac00310
Lysine degradation
slac00380
Tryptophan metabolism
slac00785
Lipoic acid metabolism
slac01100
Metabolic pathways
slac01110
Biosynthesis of secondary metabolites
slac01120
Microbial metabolism in diverse environments
slac01200
Carbon metabolism
slac01210
2-Oxocarboxylic acid metabolism
Brite
KEGG Orthology (KO) [BR:
slac00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
SKTS_10420 (sucB)
09105 Amino acid metabolism
00310 Lysine degradation
SKTS_10420 (sucB)
00380 Tryptophan metabolism
SKTS_10420 (sucB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SKTS_10420 (sucB)
Enzymes [BR:
slac01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.61 dihydrolipoyllysine-residue succinyltransferase
SKTS_10420 (sucB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-oxoacid_dh
Biotin_lipoyl
E3_binding
Biotin_lipoyl_2
HlyD_3
Motif
Other DBs
NCBI-ProteinID:
BCB26156
UniProt:
A0A6F8VAX4
LinkDB
All DBs
Position
1048405..1049565
Genome browser
AA seq
386 aa
AA seq
DB search
MQIEIKVPALSESVTEGTLLTWHKQEGDAVAQGENLIDLETDKVVLELPAPQAGVLSRIV
RQNGEVVRPGDVLAMLDTEARVAPPVTKAALEPALSPSVRKLVAEHDLDAAQIAGSGRGG
RVTKEDVLAQVEKSAQPTFASAPVQIPAPALNGERPEQRVPMTRLRARVAERLVQAQQTA
AILTTFNEVNMQPVMELRNRHKDKFEKEHGVKLGFMSFFVKAAVAALKKFPAVNASIDGG
DIIYHGYFDIGIAVGSPRGLVVPVVRDADALSFADIEKKIADFGARARDGKLTIEELTGG
TFTISNGGVFGSMMSTPILNPPQSGILGMHKTYDRPVAENGQVVIRPMMYLALSYDHRIV
DGREAVLFLVAIREALEDPARLLLGV
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcgaaatcaaagttccagccctgtcggaatcggttacagaaggcacccttttg
acgtggcacaagcaggaaggcgatgccgtggctcagggcgagaacctgatcgacctggaa
acggacaaggtggtgctggaactccccgcgccgcaggccggagtattgagccgcatcgtc
aggcagaacggcgaggtggttcgtcccggcgatgtgctggccatgctcgacaccgaagca
agggtggcgcctccggtgaccaaggcggcgctcgaaccggctctcagcccgtcagtgcgc
aagctggtggcggaacacgatctcgacgcggcacagatcgctggcagcggtcgcggcggg
cgggtgaccaaggaagatgtgctggcgcaagtggaaaaatccgcccagccgaccttcgcc
agcgctcccgtgcaaatcccggcgccggcgttgaacggcgagcgtcccgagcagcgcgtg
cccatgacccgcctgcgcgcccgggtggcggaacgactggtgcaggcgcagcagactgcc
gccattctcaccaccttcaacgaagtcaacatgcagccggtgatggagctgcgcaatcgg
cacaaggataagttcgagaaggagcacggcgtcaagctgggtttcatgtccttcttcgtc
aaggcggcggtcgcggcgctgaagaaattcccggcggtaaacgcctccatcgacggcggc
gacatcatttaccacggctacttcgatatcggcatcgcggtgggatcgccgcgcggcctg
gtggtcccggtggtgcgcgacgcggacgcgctgtccttcgccgacatcgagaagaaaatc
gccgatttcggcgcgcgcgcgcgcgacggcaagctcaccatcgaagaactcactggcggc
accttcacgatttccaacggcggcgtgttcggctccatgatgtccacccccatcctcaat
ccgccgcaaagcggcatcctcggcatgcacaagacctacgaccgcccggtggccgaaaac
ggccaggtggtgattcgtcccatgatgtatcttgcgctgtcctacgatcaccgcatcgtc
gacggccgcgaggcggtgctgttcctggtggcgatcagggaggcgctggaagaccccgcg
cgtttgttgttgggggtttga
Sulfurimicrobium lacus skT11: SKTS_26710
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Entry
SKTS_26710 CDS
T06796
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
slac
Sulfurimicrobium lacus skT11
Pathway
slac00010
Glycolysis / Gluconeogenesis
slac00020
Citrate cycle (TCA cycle)
slac00260
Glycine, serine and threonine metabolism
slac00280
Valine, leucine and isoleucine degradation
slac00310
Lysine degradation
slac00380
Tryptophan metabolism
slac00620
Pyruvate metabolism
slac00630
Glyoxylate and dicarboxylate metabolism
slac00640
Propanoate metabolism
slac00670
One carbon pool by folate
slac00785
Lipoic acid metabolism
slac01100
Metabolic pathways
slac01110
Biosynthesis of secondary metabolites
slac01120
Microbial metabolism in diverse environments
slac01200
Carbon metabolism
slac01210
2-Oxocarboxylic acid metabolism
slac01240
Biosynthesis of cofactors
Module
slac_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
slac_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
slac00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SKTS_26710 (lpdA)
00020 Citrate cycle (TCA cycle)
SKTS_26710 (lpdA)
00620 Pyruvate metabolism
SKTS_26710 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
SKTS_26710 (lpdA)
00640 Propanoate metabolism
SKTS_26710 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
SKTS_26710 (lpdA)
00280 Valine, leucine and isoleucine degradation
SKTS_26710 (lpdA)
00310 Lysine degradation
SKTS_26710 (lpdA)
00380 Tryptophan metabolism
SKTS_26710 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
SKTS_26710 (lpdA)
00670 One carbon pool by folate
SKTS_26710 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slac04147
]
SKTS_26710 (lpdA)
Enzymes [BR:
slac01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
SKTS_26710 (lpdA)
Exosome [BR:
slac04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
SKTS_26710 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Biotin_lipoyl
FAD_oxidored
Pyr_redox_3
GIDA
AlaDh_PNT_C
FAD_binding_2
HI0933_like
DAO
NAD_binding_8
Thi4
Spermine_synth
FAD_binding_3
GCV_H
UDPG_MGDP_dh_N
3HCDH_N
Motif
Other DBs
NCBI-ProteinID:
BCB27785
UniProt:
A0A6F8VG93
LinkDB
All DBs
Position
complement(2803532..2805238)
Genome browser
AA seq
568 aa
AA seq
DB search
MSKIIEVSVPDIGDFNDVPVIEVLVKPGDRIEKETALVTLESEKSTMEIPSSHAGVVKSV
RLKLGDKVSRGAEILTLEVDEVEPAPTPAPAPSVAPEAASGNEIRADVVVLGGGPGGYTA
AFRAADLGKKVVLIERYAALGGVCLNVGCIPSKALLHVAKVISEAEEMGAHGVKFAKPKV
DIDEVRGWKESVVNRLTGGLMQLAKQRNVQVIQGRGQFVAPHHIKVETEQGEVSVSFDNA
IVAAGSQAVKIPSFPVDPRVMDSTGALALADVPKKMLVIGGGIIGLEMATVYHALGSKIT
VVELGEQLIPGCDKDIVKPLHKKIEKHYEIFLNTKVAGLEARKDGIVASFEGENAPAPQS
FDRVLVAVGRRPNGKLIGAENAGILVNEQGFIPVDKQQRTNVPHIFAIGDIVGQPMLAHK
AVHEAKVAAEVIAGHKAAFDARTIPSVAYTDPEVAWMGLTETEAKAQGIDYEKASFPWAA
SGRALSINADYGVTKLLLEKDTRRVLGAGIVGPNAGELIAEAVLALEMGADAQDLGLTIH
PHPTLSETLCFAAEMAEGTITDMFVKKK
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaatcatcgaagtaagcgtgccggacattggcgatttcaacgacgttccggtg
atcgaggtgctggtcaagccgggagaccgtatcgaaaaggaaacagccctggtcacgctg
gaaagcgagaagtcgaccatggagattccctccagccatgccggcgtggtgaaatcggtt
cgcctcaagctgggtgacaaggtgtcccggggtgcagaaattctgacgctggaagtggat
gaggtggaacccgccccaaccccggcacccgcgccttccgtcgctcctgaggcggcatcc
ggcaatgaaatccgtgctgacgtggtggtgctcggcggtggtccgggcggctacacggcc
gcttttcgcgctgccgacctgggcaagaaggtcgtgctgatcgaacgctacgccgccctg
ggcggggtgtgcctcaatgtcggctgcataccctccaaggcgctgctgcatgtggcgaag
gtgatttccgaggccgaggagatgggcgctcacggcgtcaagttcgccaagccgaaggtc
gatatcgacgaggttcgtggctggaaagagagcgtggtgaaccgtctcaccggcggcctg
atgcagctggcgaaacagcgcaatgtgcaggtgatccaggggcgcggccagttcgtcgcg
cctcaccacatcaaggtggagacggaacagggcgaagtaagtgtttcattcgacaacgcc
atcgtcgccgccggctcccaggcggtaaagatacccagttttccggttgatccgcgcgtc
atggattccaccggtgcccttgcactggcggacgtgccgaaaaaaatgctggtcatcggc
ggcggcatcatcggcctggaaatggctactgtgtaccacgccctgggatcgaaaatcacc
gtggtggaactgggtgaacagctcattcccggctgcgacaaggatatcgtcaagccgctg
cacaagaaaatcgagaagcactacgagattttcctgaacaccaaggtcgccggcctagag
gccaggaaagacggcatcgtggcgagcttcgagggcgaaaatgcccccgcgccgcaatcc
ttcgaccgcgtgctggtggcggtcgggcgtcgtcccaacggcaagctgatcggtgcggag
aatgccggtatcctggtcaacgagcagggctttatcccggtcgacaagcagcagcgcacc
aacgtgccccacatcttcgccatcggcgacatcgtcggccagcccatgctggcgcacaag
gcggtgcacgaggccaaggtggcggcggaagtcatcgccggccacaaggcggccttcgat
gcgcgcaccatcccctccgtggcttacaccgatcccgaagtggcatggatggggctgacc
gaaaccgaggccaaggcgcaggggatcgactacgagaaggcctccttcccgtgggcggcc
agcggccgtgcgctgtcgatcaatgccgattacggtgtgaccaagctgctgctcgaaaaa
gacacgcgccgcgtgctgggggccgggatcgtcggccccaacgccggagagttgatcgcg
gaagccgtgctggccctggaaatgggggccgatgcgcaggacctcggcctgaccattcat
ccgcatcccaccttgtcggaaacgctgtgcttcgctgcggaaatggctgaggggacgatc
accgacatgttcgtgaaaaagaaatag
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