Silene latifolia (white campion): 141599015
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Entry
141599015 CDS
T11116
Name
(RefSeq) nuclear pore complex protein GP210 isoform X1
KO
K14314
nuclear pore complex protein Nup210
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141599015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141599015
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141599015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_2nd
Ig_NUP210_15th
Ig_NUP210_3rd
Ig_NUP210_9th
Motif
Other DBs
NCBI-GeneID:
141599015
NCBI-ProteinID:
XP_074274982
LinkDB
All DBs
Position
9:9043504..9066525
Genome browser
AA seq
1934 aa
AA seq
DB search
MLLHASLLLVFIFVLSTLNNGVQSLSGPHIADVNILLPPKMTHPVEYRLLASDGCFKWSW
DHHDILSVVPEYNESNHCSTSARLQSIAPYAGRKETAIYAADVLTGMVVRCKVYIDMFTR
IQIFHSSVKLDLDGLATLRVRAFDSQENVFSSLVGLRFVWQLMPESDGSPHHLVHVPLSD
SPLSDCSGYCGDLEIQTKLEDSGVHSDLLVVKGTEIGQEVVSVRLFEREYDSMTDKIHLT
VAEAMSLEPPSPVLVLVGAALPYSLKVIRGNIPQVVPLPSPFHRWSSTNSSIAQVDYSMG
IVHAMNLGETSIVVEDIRVAGHVQISSLNVVVPDHIYLFLSPISINGGPLEGVEPVVSNG
RWFVVIGRHYLVEVKVFSRGPTARVIHTTLNENVQLDYYEPEYWRNFSVPDSTAANYGWQ
NSRMLEPIAQGLGKLSASLTYYTSHPEKKEIMNVVQEIMVCEQVRSVDEGRNTLLSSLLL
PWSPDVYQEAELHTVGGCAKTPFDYKWLSSDDSIVSVSVMGVVQAKRPGKASVKVVSVYD
SLNFHEVMIEVAIPSSMVMLPKFPVETVVQSNLYAAVAMKTSNGDYFHKCDAFHLFVKWS
TGSDSFVVLNNTADSFHKNQLKKVERSDLDHQAACSWISLYASSPGQAILHATFSKPIDF
GYSRQILLKASASIASFLPVTLHQAGDGNKVGGYWFDLEKVGNNDLSGILNELFLVPGAS
LDVILVGGPRRWGKGVDFVETVDIHYERSPHNIEGLVYQVPILEGNGYRIVCQKAGNFTV
VFKRGNLIGDDHPQPVVAKTRLHLECSFPSSIVVLADEPVNKLDVVQNAILADRGPGRLR
STPVTVANGRTIRVSAVGISMSGKAFANSSSVPLLWELKNCEDLASWDEPHDREVPVVGW
ERYLALKNASGQCVVRALVQKTLFNDFPSLSEKVLTDAISLQVVSTMQVYPDFCLLFFHP
NAKMNLSVFGGSCLLDAVVNDSRIVEVLQPAQDLQCSRLTLVPKSVGSAVVTVYDVGLSP
PLTAASVVKVADVDWIKIMSDDLISLREGSTISVVLLAGTNDGYTFDSSQYIYMNIHVHF
EDQYIQLVDNHTLSKNDDGNGSASNFTIYGRYAGVTTLFVTARQQSGLEILSQTIKVEVY
NSPVMHPSDIFLVPGASYVVTVEGGPQVAAFVEYTSMNDSTVAVRESFGRLSAISPGTAR
IVATFYGNERRVLCQAYANVKVGIPTTAILNVQSEELCVGCDIPIFPLLSEGDLLSFYEL
CKNYKWTIEDEKVLSFHPTEDMHDNYRLPLSGHGGYQDEYDINFMKVLYGRSGGRSKVAL
TFSCDFPSPSSFSDSRSYSALVSIMVVPDPPLAQGIPITWILPPHYTTSNLLPAHSGSQS
KRDLQSQEGTVSYSILGCCGRGDDELPKGIVSIFGSKIKTTESKNLACIQAKDHSTGRIE
VASCVRVTEVAQIRFIRKSAMFVLNLAVGAKVELPLHYYDNLGNPFHEAHNVVAFNIESN
YRDVLALDTVSQDNGSIIVKAVRHGRALVGVRMNGRVEKSDYIMISVGAHIHPQNPVLLP
GSYVNFSVEGMDNQAVGQWSSVNESVLYVDSLSGRASAFGEGTTSVAFQSATMKLETTAK
VMNRDIIFVDAPKDTLTNVFVPPEGYKFPVKFSVQKFGSRSKNVEVLYDCRVDPSFVGYT
IPLRDLNTGESYCHFFPHNPEHLANFAPKSSFKRQDISISIHAKLREAHEVSGSATALFV
GGFSVLDMNKDSLQLNLTPNSNRSILTILGNTDVGIHWLKRDVLIVRNLFKEAFRSNFEV
KVLKPKSFRDKLIFTLPANGQRVEIDVSYDAGDTKATILLLTLWKGLAGCLALLILTFII
YKCLLDRPGGPEPLPTPAGPSDQAPRTPERHSPANSNEQSPRTPQPFMEYVRRTIDETPY
YRRQGRRFDPQNTY
NT seq
5805 nt
NT seq
+upstream
nt +downstream
nt
atgttactccatgcttcactacttctcgtctttatattcgtgctcagtacactcaacaat
ggcgtccagtctctgtctggacctcacattgctgacgtcaacatccttttaccccctaaa
atgacgcaccctgttgaatatcgtcttcttgctagtgacggttgcttcaaatggtcatgg
gatcatcacgacatcttatctgttgtgcctgagtataatgaaagcaatcattgttcaact
agtgctcggctacaatcaattgctccttacgctggacgaaaggagacagcaatctatgct
gctgatgttctcacaggaatggttgttcgctgtaaagtgtacattgatatgtttaccagg
atccagatttttcacagctcggttaaacttgatttagatggtcttgcgactttacgtgtg
cgtgcttttgacagtcaagaaaatgtgttctcctcattggtgggattgcggttcgtgtgg
cagctgatgcctgaaagtgatgggtcacctcatcaccttgttcatgtccctctgagcgat
tctcccttaagcgactgcagtgggtattgtggcgacctagaaattcagacaaagcttgaa
gatagtggggtgcattcagacctcttggtagtcaagggaactgaaataggccaggaagtt
gtctcggttcgcttgtttgaaagagagtatgatagcatgacagataagattcatttgacg
gtagctgaagctatgtcactggaacctccgtctccggtccttgttcttgttggtgctgca
ctgccttatagccttaaagtcattcgtggcaacattcctcaagtggtgcctttgccttct
ccatttcaccgttggtcttcaacaaattcatccatcgctcaagtggattattcgatgggc
atagtccatgcaatgaacctaggtgaaacaagtattgtagttgaagatatcagggttgct
ggacatgtccagatatcatctctgaatgtagtcgtgccagatcatatttatttattcttg
tcacctatatctataaatggcggtcctttggagggggtagaacccgtagtgtcaaatggc
cgttggttcgttgttattggcagacattatcttgttgaagtgaaggtgttttcccgaggg
cctacggctcgagtgattcatactacactgaatgaaaatgtgcaactggattattatgag
ccggagtattggagaaatttttcggtgccagatagtactgctgcgaattatgggtggcag
aattcaagaatgctggagccaattgcacaaggacttggaaagttgtcagcttctttaact
tactataccagtcaccctgaaaaaaaggagattatgaatgtcgtgcaagaaattatggtt
tgtgaacaagtgaggtctgtagatgaaggaaggaatactttattgtcatctcttctgctt
ccttggtcgccagatgtttatcaagaggcagagctacatactgttggaggttgtgcaaaa
acaccttttgattataagtggctttcttctgatgatagcattgtatctgtatctgttatg
ggtgttgtccaggctaagagacctgggaaagcgtctgttaaagttgtttcagtatatgac
agtctcaactttcatgaggtaatgattgaggttgccatcccttcatctatggttatgctt
ccaaaatttcctgtagagactgttgttcagtcgaacctttatgctgctgttgctatgaaa
acatcaaatggtgactatttccataagtgtgacgctttccatttatttgtaaagtggtca
actggaagtgattcgtttgtagtactcaacaacactgcggactcgtttcacaagaatcag
ctgaaaaaagttgaacgttccgaccttgatcatcaagctgcttgttcctggatctctctt
tatgcctctagtcctggtcaagcgattttgcatgcaaccttttcaaagcctattgatttt
ggttacagcaggcaaattctattgaaggcatctgcttcgattgcttcctttttaccagtt
actttacatcaagctggggatggtaataaggttggtggttattggtttgacttggagaaa
gttggaaataatgatctatctggaattttaaatgaattatttcttgtacccggggcctct
ttagatgttatacttgttggaggacccagaaggtggggaaaaggagttgattttgttgaa
actgtggatattcattatgaacggtctcctcataacattgaaggccttgtttaccaagtc
cctattttggaagggaatggatacagaatagtatgccaaaaagctggaaactttacagtc
gttttcaaacgtgggaatttgattggagatgaccatccacaacctgtggtagctaagaca
aggttgcatcttgaatgcagctttccttcttcaattgtggtgctagctgatgaacctgtc
aacaaattggatgtcgtacaaaatgctatcctagctgaccgtggtcctggacgtcttcgc
tccacacctgtaaccgtagcaaatggacggaccattagagtatctgcagttgggattagt
atgtcaggaaaagcctttgcaaactcctcttctgttcctttgctatgggagttgaaaaat
tgtgaagacctggcatcatgggatgaacctcatgatcgtgaagtacccgtcgtaggttgg
gaaagatatctagctttaaaaaatgcatcaggccagtgtgttgttcgtgctttggttcaa
aagactctcttcaatgactttccttctttatctgagaaagttcttacagatgctatctct
cttcaagttgtttcaaccatgcaagtatatccggatttctgcttgcttttcttccatccc
aatgcaaagatgaatctctctgtttttggaggtagctgcttgctggatgctgttgtaaat
gattctcgaattgtagaagttttacaacctgcgcaagatctacagtgctcacggttaact
ttggttcctaaaagtgttggatcggcagttgttactgtctatgatgtaggactttcaccg
ccactcacagctgcttcagtggtcaaagttgctgatgtagactggataaagattatgtcg
gatgatcttataagcctgagggaaggaagcactatttctgttgttctacttgctggaacg
aatgatggatatacatttgactcttcgcagtatatttacatgaacattcatgtacatttt
gaagaccagtacattcaacttgtagacaatcatactttgtcaaagaatgacgatgggaac
ggtagtgcatctaacttcacaatatatggcagatatgctggagtgaccacgctctttgtt
acagccagacagcaatctggtctggagatattaagtcagaccattaaagttgaagtctat
aattctcctgtgatgcacccgagcgatatttttctagtgcctggtgcctcttatgtggtt
actgtggaaggaggaccccaagttgctgcctttgttgagtacacaagtatgaatgatagt
actgtggcggtacgggaatcttttggacggctatctgccatctctccaggaactgctaga
attgtggcaactttttatgggaatgagcgtagagttctctgccaagcgtatgctaatgtc
aaggtaggaattccaactacagctatcctgaatgtgcaaagtgaagaactctgtgtggga
tgtgacataccaatttttcctctcttaagtgagggtgatctgctctcattttatgagctt
tgtaagaactacaagtggactatagaggatgaaaaggtgttgagtttccatcccactgag
gacatgcatgataattaccgactgcccctttctggccatggtggctatcaggatgagtat
gatatcaactttatgaaagttctgtatggaaggtctggaggaaggagcaaggttgcactt
acattttcttgcgatttcccatctcctagttcattttcagattccagatcttacagtgca
ttggtttccataatggtggtgcctgatcctcctcttgctcaagggattccaataacatgg
attcttcctccacattacactacatcaaatctcttgcctgcacattctggatcacaaagc
aaaagagatttgcaaagtcaagagggaactgtttcttactctatattgggctgttgtggt
cgtggagatgatgaactgccaaagggtattgtttctatatttggaagtaaaataaaaacc
acagaaagcaagaatcttgcttgcatccaggctaaagatcacagcactggaagaatagaa
gttgcatcttgtgtaagggttactgaggttgctcagatcaggtttattaggaagtcagca
atgtttgtacttaatcttgctgttggtgctaaagttgaacttccactacattattatgac
aatttggggaatccctttcacgaagctcataatgtggtagccttcaacattgagagcaac
taccgggatgttcttgctcttgataccgtcagtcaggacaatggcagtattattgtcaag
gctgtgcgacatggtagagctcttgttggcgttagaatgaatggcagagtggagaaatcg
gactacatcatgatttctgtcggagctcatatacatccacaaaatcctgttctgctgcct
ggaagctatgttaattttagcgtagaagggatggataatcaagcagtgggtcagtggtca
agtgtcaatgaaagtgtgctctatgtggactctttatctggcagggcttcagcatttgga
gaagggacaacatcagttgcatttcaaagtgccactatgaagcttgaaacaactgctaaa
gtgatgaatagggatatcatatttgttgatgctccgaaggacaccttaaccaatgttttt
gtccctccagaaggatataaatttccagtgaaattcagtgtccaaaaatttggatctcga
agcaaaaatgtggaggttctttatgactgtcgggtggatccctcctttgtcgggtatact
attccattgagggacctcaacaccggtgaatcatattgtcatttcttccctcataatcca
gaacatttagcaaattttgcacccaaatcatcatttaaaagacaggacatatctatttct
attcatgcgaaactaagagaagctcatgaagtgtcaggctccgcaactgcactttttgtt
ggcggtttttctgtcctcgatatgaataaggattctttgcagctgaatttgacacctaat
tccaatagaagcatcttaacaattttgggtaatacagatgttggcatccattggttgaaa
cgagatgtgctgattgttcggaacttgtttaaagaagctttccgttcaaactttgaggtg
aaagtattaaaaccaaagagtttcagagacaaactcatatttactctacccgccaatggt
cagagagtagagatagatgtcagctatgatgcaggcgacacgaaggcgacgattctgctt
ctaacgctgtggaaaggacttgcagggtgtttagctctcctaatactgacatttattatc
tataaatgtctcctggacagacctggtggacccgagccattgcctactccggcaggccca
agtgatcaagcacctaggactcctgaacgtcatagcccggctaattcaaatgaacaatct
ccgcggacacctcaacccttcatggaatatgtgaggagaacaatcgatgaaactccatac
tacagacggcaaggaagaaggtttgatccacaaaatacatactag
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