KEGG   Silene latifolia (white campion): 141657499
Entry
141657499         CDS       T11116                                 
Name
(RefSeq) 5'-3' exoribonuclease 4
  KO
K20553  5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
slaf  Silene latifolia (white campion)
Pathway
slaf04016  MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:slaf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04016 MAPK signaling pathway - plant
    141657499
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:slaf03019]
    141657499
Messenger RNA biogenesis [BR:slaf03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     141657499
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC zf-CCHC_5
Other DBs
NCBI-GeneID: 141657499
NCBI-ProteinID: XP_074320860
LinkDB
Position
5:complement(68227561..68240817)
AA seq 940 aa
MGVPAFYRWLADRYPLAISDVVEEEPKEDGNGVLQPVDVTKPNPNAMEFDNLYLDMNGII
HPCFHPDKKPPPTTYDDVFKTMFAYIDHLISLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAEAEEERLRKEFEAEGQILASKEKAETCDSNVITPGTEFMFVLSVALQYYIQ
KRLNNHPGWRKMKVILSDANVPGEGEHKVMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVVLMPSQQEKCFRCGQIGHFAADCHGNSGDQNGNLVDETPVYKKKY
QFLNIWILREYLQYDLEILNPPFKTNFERLIDDFVFLCFFVGNDFLPHMPTLEIREGAIN
LLMHVYRREFAAMGGYLTEAGEVFLDRVEYFVQSVAVHEDQIFHKRSRIQQIMEINEEKN
KSRREPKDSLEEPSVPVEDKIKLGEPGYKERYYSEKFGVTSPSEIDKIRKEVVLKYVEGL
CWVCRYYYQGVSSWQWFYPYHYAPFASDLKDLTDMEITFFLGEPFKPFDQLLGTLPAASS
NALPEMYRKLMTDPSSPLQEFYPADFEIDMNGKRFAWQGIAKLPFIDEKKLLDETKNLEA
TLTVQEQLRNSAMLDLLYVHPAHPLASQIVSFYHFFYQLPPQQRYAWPIDTNVSGGMNGY
LWISERNGWRQVIPSSVAGLPDIINNQALNITYLNPLPHKHIAECPKGVIMPAKVINYSD
VKPFPELWHEQNSRRQSGRERPQVPGAIGGPQLGQAAHRLLKNTLNIKQIDSSPIVDYMP
YRNHPGHPMSHRPRPAGPAGYERGYYDDNNYYYGQPSHHHGPRGAPNGPRAPYDSRGDRY
HGRPEDNRDLRVAMSNLTMDGLRNRPQMLMRPRAQHNVVQNGSQLPSPPVKWINRPEAGN
NMYFRQQEILPQQQQQLRQMYQVKTHGPHSSSDAGSTQQG
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgggtgttccagcattctacaggtggttagctgatcgttatcctttggcgatctccgac
gtcgttgaagaagaaccaaaggaagatggaaacggcgtcctacagcctgttgatgttact
aaaccaaaccctaatgccatggagtttgataatttatacttggatatgaatgggattatt
cacccttgtttccaccctgacaaaaagcctccacccacaacatatgatgatgtgttcaaa
acaatgtttgcctacattgatcatctcatctcattggttcgcccaaggaagattctctat
atggcaattgatggagttgcgccaagagctaagatgaatcagcaacgctcccgacgtttc
agagctgcaaaagatgctgctgatgctgaagcagaagaggaaagattgaggaaggagttt
gaggctgaaggacagatcctagcttcgaaagagaaagcagaaacctgtgactcaaatgtc
attactccagggacagagtttatgtttgtgctgtcggtggctcttcaatattatattcag
aaacgtttgaacaatcatcccgggtggcggaagatgaaggttattctgtctgatgccaat
gtgcctggtgaaggagaacataaagttatgtcatacattcgcttgcaaagaaaccttcct
ggttttgatccaaatactcgacattgtctctatggacttgatgctgatttgataatgttg
gctttagccacacatgaggtccacttctcaattttgagagaggtggtccttatgccttcg
caacaggagaaatgtttccgttgtggacaaattggtcattttgctgctgattgtcatggc
aactctggtgaccaaaatggaaatttagtagatgaaacccctgtatacaagaaaaaatat
caatttctcaatatttggattttgagagagtatctgcaatatgatctggagattctcaat
cctccatttaagaccaactttgaacgcctgattgatgatttcgtgtttctctgtttcttt
gtgggcaatgacttccttccacatatgcctacactagaaatacgggagggtgctataaat
ttgctgatgcatgtatatagaagagaatttgctgctatgggtggttatcttacggaggct
ggtgaagtctttcttgatagagtggagtactttgttcaatcagttgcagttcatgaagac
caaatctttcataaacgttcccgcatacagcagataatggagatcaatgaggagaaaaac
aagtcaagaagagagccaaaagattcattggaagagccttcagtgcctgttgaggacaag
atcaaactaggggagcctggttacaaggagaggtattattccgagaaatttggtgttaca
agtccttcagaaattgacaagattagaaaagaagtggttttgaagtatgttgaaggtttg
tgttgggtttgccgttactactaccaaggtgttagctcatggcaatggttctatccatac
cactatgctccattcgcttcggatcttaaagatctaactgatatggaaataacatttttc
ttgggagagcctttcaagccttttgaccagctcttgggaactctaccggctgccagttcc
aatgctctgcctgagatgtacaggaagttgatgacagacccatcatcacccttgcaggag
ttctatcctgccgattttgagattgatatgaatggtaaacgctttgcgtggcagggtatt
gctaagctgccgtttattgatgagaagaaattgcttgatgagacaaagaatcttgaggct
actttgacagtacaagaacagttacgaaacagtgcgatgcttgatttgctgtatgtgcat
cctgctcatcctttggcatcacaaattgtatcattttaccatttcttttatcagctacca
ccccagcaaagatatgcttggcctatcgacaccaatgttagcggcgggatgaatggatat
ctttggatatctgagaggaatgggtggagacaagtgatcccctccagtgttgctgggcta
ccagatattatcaataatcaagctctaaacatcacatacttgaatcctctgcctcataaa
cacattgcagaatgtccaaagggagtgatcatgccagcaaaggtgattaactattccgat
gtcaaacctttccccgaattatggcatgaacagaacagcagaaggcaatcagggcgcgaa
cggccacaagtaccgggggcaataggtgggcctcagttgggtcaagctgctcaccgtctt
ttaaagaatacattaaatattaaacagattgactcatctcctatagtagattacatgcca
tatcggaatcatcctggacaccctatgtctcacaggcccagacctgccggacctgccggg
tatgaacgaggctactatgacgacaacaactactattatgggcagcctagtcaccaccat
ggcccccgaggtgcacccaatgggcctagggcgccttatgactctcggggagatagatac
catggcaggccagaagacaatcgtgatcttcgagttgccatgtcaaatttgacaatggat
gggcttaggaatcggccacaaatgttgatgcgacctagggctcagcacaatgttgtgcaa
aatggtagtcaactcccgtcgccgcctgtcaagtggattaatagacccgaagctggaaac
aacatgtattttcgacagcaagagattttacctcagcagcaacagcagcttcgccagatg
tatcaagtcaagacacatgggccccatagttcatcagatgcaggatccacgcaacaagga
tga

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