Silene latifolia (white campion): 141657499
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Entry
141657499 CDS
T11116
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
141657499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141657499
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
141657499
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
141657499
NCBI-ProteinID:
XP_074320860
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Position
5:complement(68227561..68240817)
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AA seq
940 aa
AA seq
DB search
MGVPAFYRWLADRYPLAISDVVEEEPKEDGNGVLQPVDVTKPNPNAMEFDNLYLDMNGII
HPCFHPDKKPPPTTYDDVFKTMFAYIDHLISLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAEAEEERLRKEFEAEGQILASKEKAETCDSNVITPGTEFMFVLSVALQYYIQ
KRLNNHPGWRKMKVILSDANVPGEGEHKVMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVVLMPSQQEKCFRCGQIGHFAADCHGNSGDQNGNLVDETPVYKKKY
QFLNIWILREYLQYDLEILNPPFKTNFERLIDDFVFLCFFVGNDFLPHMPTLEIREGAIN
LLMHVYRREFAAMGGYLTEAGEVFLDRVEYFVQSVAVHEDQIFHKRSRIQQIMEINEEKN
KSRREPKDSLEEPSVPVEDKIKLGEPGYKERYYSEKFGVTSPSEIDKIRKEVVLKYVEGL
CWVCRYYYQGVSSWQWFYPYHYAPFASDLKDLTDMEITFFLGEPFKPFDQLLGTLPAASS
NALPEMYRKLMTDPSSPLQEFYPADFEIDMNGKRFAWQGIAKLPFIDEKKLLDETKNLEA
TLTVQEQLRNSAMLDLLYVHPAHPLASQIVSFYHFFYQLPPQQRYAWPIDTNVSGGMNGY
LWISERNGWRQVIPSSVAGLPDIINNQALNITYLNPLPHKHIAECPKGVIMPAKVINYSD
VKPFPELWHEQNSRRQSGRERPQVPGAIGGPQLGQAAHRLLKNTLNIKQIDSSPIVDYMP
YRNHPGHPMSHRPRPAGPAGYERGYYDDNNYYYGQPSHHHGPRGAPNGPRAPYDSRGDRY
HGRPEDNRDLRVAMSNLTMDGLRNRPQMLMRPRAQHNVVQNGSQLPSPPVKWINRPEAGN
NMYFRQQEILPQQQQQLRQMYQVKTHGPHSSSDAGSTQQG
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattctacaggtggttagctgatcgttatcctttggcgatctccgac
gtcgttgaagaagaaccaaaggaagatggaaacggcgtcctacagcctgttgatgttact
aaaccaaaccctaatgccatggagtttgataatttatacttggatatgaatgggattatt
cacccttgtttccaccctgacaaaaagcctccacccacaacatatgatgatgtgttcaaa
acaatgtttgcctacattgatcatctcatctcattggttcgcccaaggaagattctctat
atggcaattgatggagttgcgccaagagctaagatgaatcagcaacgctcccgacgtttc
agagctgcaaaagatgctgctgatgctgaagcagaagaggaaagattgaggaaggagttt
gaggctgaaggacagatcctagcttcgaaagagaaagcagaaacctgtgactcaaatgtc
attactccagggacagagtttatgtttgtgctgtcggtggctcttcaatattatattcag
aaacgtttgaacaatcatcccgggtggcggaagatgaaggttattctgtctgatgccaat
gtgcctggtgaaggagaacataaagttatgtcatacattcgcttgcaaagaaaccttcct
ggttttgatccaaatactcgacattgtctctatggacttgatgctgatttgataatgttg
gctttagccacacatgaggtccacttctcaattttgagagaggtggtccttatgccttcg
caacaggagaaatgtttccgttgtggacaaattggtcattttgctgctgattgtcatggc
aactctggtgaccaaaatggaaatttagtagatgaaacccctgtatacaagaaaaaatat
caatttctcaatatttggattttgagagagtatctgcaatatgatctggagattctcaat
cctccatttaagaccaactttgaacgcctgattgatgatttcgtgtttctctgtttcttt
gtgggcaatgacttccttccacatatgcctacactagaaatacgggagggtgctataaat
ttgctgatgcatgtatatagaagagaatttgctgctatgggtggttatcttacggaggct
ggtgaagtctttcttgatagagtggagtactttgttcaatcagttgcagttcatgaagac
caaatctttcataaacgttcccgcatacagcagataatggagatcaatgaggagaaaaac
aagtcaagaagagagccaaaagattcattggaagagccttcagtgcctgttgaggacaag
atcaaactaggggagcctggttacaaggagaggtattattccgagaaatttggtgttaca
agtccttcagaaattgacaagattagaaaagaagtggttttgaagtatgttgaaggtttg
tgttgggtttgccgttactactaccaaggtgttagctcatggcaatggttctatccatac
cactatgctccattcgcttcggatcttaaagatctaactgatatggaaataacatttttc
ttgggagagcctttcaagccttttgaccagctcttgggaactctaccggctgccagttcc
aatgctctgcctgagatgtacaggaagttgatgacagacccatcatcacccttgcaggag
ttctatcctgccgattttgagattgatatgaatggtaaacgctttgcgtggcagggtatt
gctaagctgccgtttattgatgagaagaaattgcttgatgagacaaagaatcttgaggct
actttgacagtacaagaacagttacgaaacagtgcgatgcttgatttgctgtatgtgcat
cctgctcatcctttggcatcacaaattgtatcattttaccatttcttttatcagctacca
ccccagcaaagatatgcttggcctatcgacaccaatgttagcggcgggatgaatggatat
ctttggatatctgagaggaatgggtggagacaagtgatcccctccagtgttgctgggcta
ccagatattatcaataatcaagctctaaacatcacatacttgaatcctctgcctcataaa
cacattgcagaatgtccaaagggagtgatcatgccagcaaaggtgattaactattccgat
gtcaaacctttccccgaattatggcatgaacagaacagcagaaggcaatcagggcgcgaa
cggccacaagtaccgggggcaataggtgggcctcagttgggtcaagctgctcaccgtctt
ttaaagaatacattaaatattaaacagattgactcatctcctatagtagattacatgcca
tatcggaatcatcctggacaccctatgtctcacaggcccagacctgccggacctgccggg
tatgaacgaggctactatgacgacaacaactactattatgggcagcctagtcaccaccat
ggcccccgaggtgcacccaatgggcctagggcgccttatgactctcggggagatagatac
catggcaggccagaagacaatcgtgatcttcgagttgccatgtcaaatttgacaatggat
gggcttaggaatcggccacaaatgttgatgcgacctagggctcagcacaatgttgtgcaa
aatggtagtcaactcccgtcgccgcctgtcaagtggattaatagacccgaagctggaaac
aacatgtattttcgacagcaagagattttacctcagcagcaacagcagcttcgccagatg
tatcaagtcaagacacatgggccccatagttcatcagatgcaggatccacgcaacaagga
tga
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