Sphingomonas lacunae: GV829_13975
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Entry
GV829_13975 CDS
T07071
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slan
Sphingomonas lacunae
Pathway
slan03030
DNA replication
slan03410
Base excision repair
slan03420
Nucleotide excision repair
slan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GV829_13975 (ligA)
03410 Base excision repair
GV829_13975 (ligA)
03420 Nucleotide excision repair
GV829_13975 (ligA)
03430 Mismatch repair
GV829_13975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slan03032
]
GV829_13975 (ligA)
03400 DNA repair and recombination proteins [BR:
slan03400
]
GV829_13975 (ligA)
Enzymes [BR:
slan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GV829_13975 (ligA)
DNA replication proteins [BR:
slan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GV829_13975 (ligA)
DNA repair and recombination proteins [BR:
slan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GV829_13975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GV829_13975 (ligA)
MMR (mismatch excision repair)
DNA ligase
GV829_13975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GV829_13975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QJQ33404
UniProt:
A0A6M4AWE1
LinkDB
All DBs
Position
complement(2922541..2924595)
Genome browser
AA seq
684 aa
AA seq
DB search
MALSEAEAANRLLRLAKEIARHNRLYHDQDAPEISDADYDALVRENAALEAEFPHLVRAD
SPSRMVGAPTSSALTKVPHAKPMLSLDNAFSGEEVEEFVARIRRFLALGDAEPVCLTAEP
KIDGLSCSLRYEDGVLVRAATRGDGTVGEDVTANVRTITDIPERLTGAAPAVFEVRGEVY
MAKSDFAALNAAQEAAEQKLFANPRNAAAGSLRQKDASVTAARPLRFLAHGWGEVSELPA
DTQMGVMRAIGDWGLPLSDLLIRADGAGAALAHYGHIESKRADLPFDIDGVVYKVDRLDW
QARLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVGVGGVIVSNV
TLHNRDEIARLGVHPGDRVVIQRAGDVIPQVVDNLSRDEAREPWAFPDHCPDCGSEAVAE
EGEVDVRCTGGLICPAQRFERLRHFVSRPALDIEGLGEKSIAEFLGYGWLERPGDIFRLK
RHRDELVGREGWKDKSVDNLLAAIEAKRAPDAARLLFGLGIRHVGAVTARDLLKAFGTLP
ALRETAQAAHGGEAGALAQLTSIDGIGPAVVEALGDFFHEPHNVDLWEDLLSEVNPPAYV
SNARQTEWSGKTIVFTGKLETMSRDEAKAQAESLGAKAAGSVSAQTDLVVAGPGAGSKLK
KATELGIRVVDEAEWATIIAATGV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctttgtctgaagccgaagccgccaatcgtctgctgcgtctcgccaaggagattgcg
cggcataaccggctctatcatgatcaggatgcgcccgagatttcggatgccgactatgac
gcgctggtccgtgaaaatgctgcgctggaggcggagttcccccatcttgtccgcgccgac
agcccgtcgcgcatggtcggtgcacccacatcttcggcgctcaccaaagtgccgcacgcc
aagccgatgctcagcctcgacaacgccttttcgggcgaggaggttgaggaatttgtcgcc
cgcatccgccgtttcctcgcactgggtgacgcggagccggtgtgcctgacggcggagccc
aagattgacggcctgtcctgctcgctgcgttatgaggatggcgtgctggtacgcgccgcc
acgcgtggcgatggcacggtgggggaggatgtcaccgccaacgtccgcaccatcaccgac
attcccgaacgcctgacaggagccgcccccgccgtcttcgaggtgcgcggtgaggtctat
atggcgaagtccgatttcgccgcgctcaatgccgcgcaggaagccgccgagcaaaagctg
tttgccaatccccgcaatgccgctgccggcagcctgcggcaaaaggacgccagcgtcact
gccgcgcggcccttgcgcttcctcgcccatggctggggagaggtgtctgaactccccgcc
gacacacagatgggtgtgatgcgggcgatcggtgattggggtctgccgctttccgacctg
ctcatccgcgccgatggggcaggggccgcgctcgcccattatggccacatagaaagcaag
cgtgccgacctgccgttcgacattgacggtgtggtgtacaaggtcgaccggctcgactgg
caggcgcggctaggctttgttgcaaaggcgccgcgctgggccatcgcccataaattcccc
gccgaacgcgcgcagaccacgctcgaagcgatcgacatccaggtcggccgcactggcaag
ctgacgcctgtcgggcggctgaccccggtcggtgtcggcggtgtcattgtatccaacgtc
acgctgcacaatcgcgacgagattgcccgtctcggcgtgcatccgggcgaccgggtggtc
atccagcgggccggggatgtgatcccgcaagtcgttgacaatctcagtcgggatgaggcg
cgcgaaccctgggccttccctgatcattgcccggactgcggcagcgaggcggtggccgag
gagggcgaagtggatgtccgctgcaccggcggcctcatctgccccgcgcaacgttttgaa
cggctccgtcacttcgtcagccgccccgcgctcgatatcgaggggttgggcgaaaagagc
atcgccgaattcctcggctatggttggctcgaacggccgggcgatatcttccgcttgaag
cggcaccgcgatgagttggttggtcgcgaaggctggaaggacaagtcggtcgacaatttg
ctcgccgcaatcgaagccaagcgcgcgcccgatgcggcccgtctgctgttcggcctcggc
atccgccatgtcggcgcggtgacggcgcgggacctgctcaaggcgttcggcacactgccg
gccttgcgagagaccgcgcaggctgcccatggcggtgaagccggggcactggcgcaattg
acctcgatcgacggcatcggcccggctgtggtcgaggcgctgggcgatttcttccacgaa
ccgcacaacgtcgatctgtgggaagacctcctctccgaagtcaacccgcccgcctatgtc
tccaacgcccgtcagaccgaatggagcggcaagaccatcgtcttcaccggcaagctcgaa
accatgagccgtgacgaagccaaggcgcaggctgagagcctgggggcaaaggctgccggc
tcggtcagcgcgcaaacagatttggtggttgcaggacccggggcagggtccaaattgaag
aaggcgaccgaactgggcattcgcgtggtggacgaagccgaatgggccaccatcattgcc
gcgaccggtgtctaa
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