Solitalea lacus: L2B55_15020
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Entry
L2B55_15020 CDS
T09884
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slas
Solitalea lacus
Pathway
slas03030
DNA replication
slas03410
Base excision repair
slas03420
Nucleotide excision repair
slas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L2B55_15020 (ligA)
03410 Base excision repair
L2B55_15020 (ligA)
03420 Nucleotide excision repair
L2B55_15020 (ligA)
03430 Mismatch repair
L2B55_15020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slas03032
]
L2B55_15020 (ligA)
03400 DNA repair and recombination proteins [BR:
slas03400
]
L2B55_15020 (ligA)
Enzymes [BR:
slas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L2B55_15020 (ligA)
DNA replication proteins [BR:
slas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L2B55_15020 (ligA)
DNA repair and recombination proteins [BR:
slas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L2B55_15020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2B55_15020 (ligA)
MMR (mismatch excision repair)
DNA ligase
L2B55_15020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L2B55_15020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_ligase
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UKJ06837
LinkDB
All DBs
Position
3501176..3503188
Genome browser
AA seq
670 aa
AA seq
DB search
MQHQEAQKLIAELTAELNQHNYNYYVLAMPTISDYDFDQKLKQLDALEKQFPDLQDPDSP
TLKVGGEITKSFKTVKHKYPMLSLGNTYSEQELLDFDARVRKAIGDNFEYVCELKFDGLS
MSFTYRNGKLIQAVTRGDGTKGDDVTTNVKTIKTIPHQLKGDNIPEEFEIRGEVFIHIAA
FEKLNAEREENGEQPFANPRNFASGTIKMQDSAEVARRPLDCFLYFLYLENAPFKTHWES
LHAIKSWGFKASEHAKLCKSMDEVLDFIHKYESERHKLSYDIDGIVIKVNSYAQQQELGF
TAKSPRWAISYKYKAEEVETQLLSITYQVGRTGAVTPVANLKPVQLAGTTVKRATLHNAN
EIERLDVRAGDTVLVEKGGEIIPKIIKVNLDKRPANSQPTIFTQTCPECETQLIRNEGEA
AWYCPNDTGCPPQIIGKMQHFTGRKAMNIDSLGDETIVQLYNAELLHNISDIYALKDKKV
QLLQLDRMGEKSANNIIEGIELSKQMPFEKVLFGLGIRYVGETVAKKLAQHFKDIDKLMQ
ANFDELVAVNEIGTRIAESVIDYFKIQEHRLVIEQLKADGLQFTIEEKEVLLESNKLDGK
TFLISGVFENFSRDALKDLIETNGGKMLSSISSKLNFLVAGDNMGPSKLQKATDLNIPII
SEQELLNMLN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatcaagaagctcaaaaattaattgctgaactgacagccgaactcaatcaacat
aactacaactactatgtcttggcaatgcctactatttcagactatgattttgatcagaaa
ctgaaacaattagatgcattggaaaaacagttccctgatcttcaagatccagactctcct
actcttaaagtgggaggagaaattaccaaatcctttaaaactgtaaaacataaataccca
atgctatcgttgggtaatacctattcagagcaagagttacttgattttgatgcaagggtt
agaaaagctattggagacaactttgaatatgtgtgtgagctaaaatttgacggtttgtca
atgagctttacttatcgcaacggtaagctaatacaagcagttacacgtggcgatgggacc
aaaggcgatgatgtaaccaccaacgtaaaaaccatcaaaaccattccacaccagcttaaa
ggagataacattccggaagagtttgaaatacggggtgaagtgtttatacatattgctgct
tttgaaaagcttaatgctgagcgcgaagaaaatggagaacaaccgtttgccaatccacgt
aattttgcttcaggaacaattaagatgcaagactctgccgaagtggcacgtcgccctctt
gattgttttttatatttcctttatttagaaaacgctccattcaaaacacattgggaaagc
ttgcatgctataaaaagttggggctttaaagcttctgaacatgctaagctttgtaaaagc
atggatgaagtcttagacttcatccataagtacgagtctgaacgtcacaagctttcttat
gatattgatggcatagtgattaaggtaaacagttacgctcaacaacaagagttgggcttt
acagccaaatctccccgttgggccatttcctataaatacaaagccgaagaagttgagacc
caactattatctatcacctatcaagttggccggactggtgctgttactccggttgctaac
ttaaagccagttcaattggctggaacaactgtaaaacgagccacattacataacgctaac
gaaatagaacgtttagatgtacgggctggagatactgttttggttgaaaaaggaggagaa
ataattcctaagattataaaagtgaacctggataagcgtccggcaaactctcagcctacc
attttcacccaaacctgtcctgagtgtgaaacacaactaatcagaaatgaaggtgaggcg
gcttggtattgcccaaatgacactggttgcccgcctcagattattggcaaaatgcaacac
tttaccgggcgcaaggccatgaatattgatagtcttggagatgaaactatcgttcaatta
tataatgcagaattattgcataacatttccgatatctacgcattaaaagacaaaaaagtc
cagttactacaattggaccgtatgggtgaaaaatcggcaaataatataattgaaggtatt
gagctttcaaagcaaatgccttttgagaaggtattatttggtttaggaatcaggtatgtg
ggtgaaactgttgcaaaaaaactggctcagcattttaaagacatagacaagctgatgcaa
gccaattttgacgagttagttgcggttaatgaaattggtacccgcattgcagaaagcgtc
atcgactattttaaaattcaggagcatcgtttagttattgaacaactaaaagccgacgga
ctccaattcactatagaagaaaaagaagttttactggaaagcaataaattagatggaaaa
acattcttaatatcaggagtattcgaaaattttagccgagatgctttgaaagaccttatt
gaaacaaatggaggaaaaatgcttagtagtatttcatctaaactaaacttccttgtcgct
ggtgacaatatgggaccttcaaaacttcaaaaggcaaccgatctgaatattcctattatt
tctgaacaagaattattgaatatgctgaattaa
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