Streptococcus lactarius: J4854_04735
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Entry
J4854_04735 CDS
T07623
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slat
Streptococcus lactarius
Pathway
slat03030
DNA replication
slat03410
Base excision repair
slat03420
Nucleotide excision repair
slat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4854_04735 (ligA)
03410 Base excision repair
J4854_04735 (ligA)
03420 Nucleotide excision repair
J4854_04735 (ligA)
03430 Mismatch repair
J4854_04735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slat03032
]
J4854_04735 (ligA)
03400 DNA repair and recombination proteins [BR:
slat03400
]
J4854_04735 (ligA)
Enzymes [BR:
slat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4854_04735 (ligA)
DNA replication proteins [BR:
slat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4854_04735 (ligA)
DNA repair and recombination proteins [BR:
slat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4854_04735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4854_04735 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4854_04735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4854_04735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QUB39755
UniProt:
A0A9X0WMG1
LinkDB
All DBs
Position
909935..911893
Genome browser
AA seq
652 aa
AA seq
DB search
MGNRMKELVELLNRYADEYYTKDAPSVSDSEYDQLYRELVELETAHPEDVLPESPTHRVG
GLVLKGFTKYQHQYPLYSLQDAFSREELEAFDQRVRKEFPSVHYVCELKIDGLSISLTYE
NGILVTGATRGDGSVGEDITENLKRVKDIPLVLPEPISITVRGECYMPRASFDRVNQVRQ
ENGEPEFANPRNAAAGTLRQLDTKIVAKRNLATFLYQEVSPTDQTSQEGVLEKLAQLGFV
VNQERVLAKDMDQIWSFIQNVAQLREGLPYDIDGIVIKVNDLAVQEELGFTVKAPKWAIA
YKFPAEEKEARLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIHQD
DTVIVYKAGDIIPAVLRVVTDKRVSDQALAIPTKCPSCQSELLHFEDEVALRCINPLCPA
QIKEGLIHFASRDAMNITGLGPAVVDKLFAAQLVADVAGIYRLTVEDLLTLEGFKEKSAE
KLYEAIQASKENSAEKLLFGLGIRHVGSKVSQILLQKFHDLDQLATADPERIAAIDSLGM
VVAQSLESYFSQEGSRQLLLELKEAGVNMDYLGKKVALDAALSGMTVVLTGKLERLTRSE
AKAKLESLGAKVTGSVSKKTDLVVAGADAGSKLTKAQELGIQVEDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacagaatgaaagaattagtggaattgcttaaccgttatgcggatgagtattac
acaaaagacgcaccatccgtatcggatagtgaatatgaccaactatatcgggaattggtc
gaattagagacagctcatccggaggacgttttgcctgaaagtccaacccatcgtgtgggt
ggactagtactgaaaggctttaccaaataccaacaccagtaccctctgtatagtttgcag
gatgctttttctcgtgaggagttagaggcatttgaccaacgtgtccgtaaggaatttcct
tctgttcactatgtttgtgagttgaaaattgatggattgtcgatttccctcacctatgaa
aatggtatccttgttacgggtgcaacgcgtggggatggctctgttggtgaggatattacg
gagaatctcaagcgggtaaaggatattcctttggtgttgccggagccaatcagtatcacc
gttcgtggtgaatgttacatgccacgagcttcctttgatcgggtcaatcaggtgcgtcaa
gaaaatggcgagcctgaatttgccaatccccgtaatgctgcagctgggacccttcgccaa
ctggataccaagattgtggctaaacggaatttagcgaccttcctttatcaagaagtgagc
ccaacggatcaaactagccaagaaggggtacttgaaaaattagcccagttaggctttgtt
gtaaaccaagagcgagtgttggccaaggatatggatcaaatttggagctttatccagaat
gtagcccagcttcgtgaaggccttccttacgatatcgatggaatcgtcatcaaggtcaat
gatttagcggttcaggaagagttaggcttcaccgtaaaagctccgaaatgggctatcgct
tataaattcccagctgaagaaaaagaagcaagactcttatcagtcgattggacggtagga
cggaccggtgtcgtgacgccaactgccaatcttacacctgtccaattagctggaaccact
gttagtcgagccacccttcacaatgtggattatatcgctgaaaaagatattcaccaagac
gataccgtgatcgtctataaggctggagacattattcctgctgttttacgtgttgtcacg
gataagcgggtatccgatcaggcacttgcaattccgacgaagtgtccgagctgtcaaagt
gagctcctgcatttcgaggatgaggtagcactacgctgtatcaatcccctctgtccagct
caaatcaaggaaggcttgatccactttgctagtcgggatgctatgaatattacaggcttg
gggccagctgtggtggataagctttttgcggctcagttagtagcggatgtggcaggaatt
tatcggttgactgtagaagatctcctgaccttggaaggttttaaagaaaagtcagcagag
aagctctatgaagccattcaagcttcaaaagaaaattcggcagagaagttgctctttggt
ctaggaattcgccatgttggtagtaaggttagtcagatcttgctacaaaaattccatgat
ttggatcaattggctacagcagatccagagcggattgctgctattgatagtctaggtatg
gtagtggctcaaagtctagagagctatttttcgcaagaaggctcacgccagctcttacta
gagttaaaagaggctggggtcaatatggactatctgggtaaaaaagtagcattggatgca
gccttatcagggatgaccgttgtcttgactggcaagcttgaacgcctgacgcgctcagaa
gccaaggctaaattagagagcctaggagcgaaagtgacaggctctgtttccaaaaaaaca
gacttggttgttgctggagcggacgcaggaagcaaattgaccaaagcacaagaattagga
atccaggtagaagatgaggcctggcttgaaagtttgtag
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