Sugiyamaella lignohabitans: AWJ20_2501
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Entry
AWJ20_2501 CDS
T05270
Symbol
SNU114
Name
(RefSeq) U5 snRNP GTPase SNU114
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AWJ20_2501 (SNU114)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slb03041
]
AWJ20_2501 (SNU114)
Spliceosome [BR:
slb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
AWJ20_2501 (SNU114)
Complex C
U5 SnRNP specific factors
AWJ20_2501 (SNU114)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFL1
EFG_III
SRPRB
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
30034420
NCBI-ProteinID:
XP_018737365
UniProt:
A0A167F681
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Position
B:1541244..1544048
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AA seq
934 aa
AA seq
DB search
MDQGPITSVSTSIVLHEDKKYYPDAEEVFGRDVETLIQDTDTQSLSEPIIAPIKTKVFSV
EESELPEVFYSRAYQANLMGLPDQIRNVAIAGQIHHGKTSLVDMLVTETHDLKAFEGRKE
DEQFRYTDTHVLERDRGISIRCSPISLLLQNGKGKSHLFNIIDTPGHVDFIDEVAVAARL
VDGMVVVVDVIEGLQINTRQVLQHIVQEGLSFVVVINKIDRLILDLKLPPVDAYYKILHV
LDTINDFLKTISPLDPKVVSPHKGNVVFSSASMEWCFTVKSFAAMYSTRSSLKTPLDVDE
FSKRLWGNIYYNPESKKFTRKNLDSQGTLTFVHFILLPLYKIYGQVIGESAEDLQKTLSE
LSIHLKPFVYKMNSKPLLKIVCKEFFGTSSALVDSILACIPSPVEGAKRKIQRTYTGPQQ
DSKLVESMYTCNQDGPLAVNVAKLFTSSDGSETFALGRVISGTLNVGDEVRVLGDNYTLE
DEEDMAVNRVSELWIPNTRYKVAVNAVPAGNWVLIGGVDSLIVKTATLVSTQLDEDAYIF
QPIKYVAQTIFKVAVEPVNPSELPKLLDGLRKVTKTYSLLQTKVEESGEHVLLASGEMYM
DCVLHDLRLLYTEMNIKVSDPVTRFSETCVETSAIKAFTETPNKRSKITIIAEPLEKGIA
EDIEAGKIKINEWPARKVGKYFQENFQWDALSARSIWAFGPDNLGPNILLDDTLPDEVDK
NLLNAVSGSIKQGFRWSTREGPLCEEPIRSTKFRILDAVLSDELYTRGGAQIITTARRAC
YSSFLLAAPRLLEPIYLCNVTCPGDAVAAVYGLLRRRRGEVLSDSAIPGTPLYLVEGVIP
VIDSFGFETDLRVATRGRAFVSLVFDQWQIVPGDPLDREQVTKPLTPALPTALARDFVLK
TRRRKGLSEEPTIDKYLDESVLESLRDSGLIDRF
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggaccagggtcctataacatctgtttccacatctattgtgcttcatgaagacaaaaaa
tactatccagatgctgaagaagtatttggacgggatgtggaaactcttattcaagatact
gatacccaatcgctatccgagcccattatagcaccaataaagacaaaagtattctcagtg
gaggagagtgagcttccagaggttttctattcaagggcataccaagcaaacctcatggga
ctacctgaccaaataagaaatgtggccatagctggtcaaattcatcatggtaaaacatcc
ttggtagatatgttggttaccgaaacacatgatctcaaagcattcgagggtaggaaagaa
gatgagcaattcagatatacagacacccatgtgctagaacgagatagaggcatttcaata
agatgttctcccatatcgctgttactacagaatggtaaaggaaaatcacacttatttaat
attatcgacacaccgggtcatgttgatttcattgacgaggtggctgtggcagctcgactt
gtggatggaatggtagtcgtggtagatgtcatcgaaggattgcaaatcaacactcgacaa
gtattacagcatattgtacaagagggtttgtcgttcgttgtggtcatcaacaagattgat
cgattaatcctcgacctgaaactaccacctgttgacgcgtattataagatcctgcatgtt
cttgacactatcaacgattttctcaaaactatatcgccattagaccccaaggttgtatct
ccacacaagggcaacgttgtattttcatcggcatccatggaatggtgttttaccgtcaag
tcgtttgcagctatgtacagtacacgatccagcctcaaaactccacttgatgtggatgag
ttttctaaacgtctatggggcaatatttattacaacccagaaagcaagaaattcacaaga
aagaatcttgattctcagggaactcttactttcgtacatttcattcttctccctctgtat
aagatctatggtcaagttattggtgaaagtgcggaagatttacaaaagaccctatctgag
ctaagcattcatctgaaaccttttgtgtacaaaatgaatagcaaaccattattaaagatt
gtctgcaaggagtttttcggcacttcttctgccttggttgactctattttggcatgtatt
ccctcaccggttgaaggtgccaaaagaaaaattcaacgcacctatacaggcccacaacag
gactctaaactggtggaatctatgtatacctgtaaccaagatggacctttggctgttaat
gttgccaaattattcaccagttctgacggatctgaaacttttgctctcggtagggtcatc
agtggcacgcttaatgtcggcgacgaggtgcgtgttttgggtgacaattatactttggaa
gatgaggaggacatggctgttaatagagtatctgagctatggattccaaatactagatac
aaagtagcggtcaacgcagtacctgccggtaattgggtgttgataggtggtgttgattca
ttaatcgtcaaaacagctactttagtttcaacacagctagatgaagatgcatacattttc
cagccaataaaatatgtggctcagactatcttcaaggtggcagtcgaaccagtcaacccg
tccgagttgcctaaattattagacggattacgaaaagttaccaaaacctattctttacta
cagacaaaagtagaagagtctggtgagcatgttttactagccagcggagagatgtacatg
gattgcgtactacatgatcttcgtctactgtatactgaaatgaacatcaaagtttctgat
cctgtaaccaggttttctgagacttgtgtagaaacctctgcaatcaaagcattcaccgaa
acgcccaacaagcgcagcaagataacgataattgcagaacctctggaaaaaggtatcgca
gaagatattgaagcaggcaagatcaaaatcaacgagtggcctgctcgaaaagtgggaaag
tacttccaggagaactttcaatgggatgcactttctgctagatcaatttgggcatttggt
cctgataatctcggacccaatattctcttggatgacacgttaccggatgaagtagataag
aatctcttaaacgctgtcagtgggtcgataaagcagggattccgttggagtacgagagag
ggtccattatgtgaagagcctattagaagcacgaaattcagaattctcgacgcagttttg
tctgatgagctttacaccagaggtggtgctcagataattacgacagcacgtcgggcttgt
tactcgtcatttttactagcggcaccacggttgctagagcccatttacttatgtaatgtc
acatgtcctggagatgccgttgcagctgtttatggcttattacgacgaagaagaggtgag
gtattatcagattcagctattcctggtactcctttgtaccttgtggagggtgtgattccc
gtcatcgactcctttggttttgaaacagatttaagagttgctactagaggacgagcattt
gtttcacttgtattcgaccaatggcaaatcgttcctggtgaccctcttgacagagaacag
gtcacaaaacctctcacccccgccttgccaactgctttagcaagggactttgttctaaag
accagacggcggaagggtcttagcgaggagcctacaatagataaatatctcgatgagagc
gtgcttgagtcattgcgagattctggtcttatagatagattttag
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