Sugiyamaella lignohabitans: AWJ20_2867
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Entry
AWJ20_2867 CDS
T05270
Symbol
CAF16
Name
(RefSeq) putative ATP-binding cassette family ATPase CAF16
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
slb
Sugiyamaella lignohabitans
Pathway
slb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWJ20_2867 (CAF16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slb03019
]
AWJ20_2867 (CAF16)
Messenger RNA biogenesis [BR:
slb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AWJ20_2867 (CAF16)
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Ortholog
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GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_15
SRP54
RsgA_GTPase
AAA_28
AAA_23
AAA_25
AAA_14
Zeta_toxin
AAA_22
ORC-CDC6-like
AAA_16
nSTAND3
MMR_HSR1
DLIC
AAA
AAA_18
DUF815
PduV-EutP
NACHT
AAA_30
AAA_33
CLP1_P
Motif
Other DBs
NCBI-GeneID:
30034825
NCBI-ProteinID:
XP_018737718
UniProt:
A0A167FFM3
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All DBs
Position
B:2654524..2655063
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AA seq
179 aa
AA seq
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MSLPSSSRTLLIGANGAGKSTLLKILAGKTLAKNGQVFIDGQDPFRDGVSGITYLGTEWA
GNPMVRRDIPVTLLLASIGGDLFPERRELLVDILDIDLRWHMHAVSDGERRRVQLAMGLL
RPWNILLLDEVTVDLDVLVRARLLDFLRNETNQRECQIVSIFRFNLIGLYNSIYTDTAC
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaccgtcatcttctcgaacccttttgatcggtgcaaatggtgctggtaagagt
acgctactgaaaattctcgctggcaaaactttagccaagaatggacaggtgtttattgat
ggccaggaccccttcagagatggtgtatcaggaataacatacctgggaaccgaatgggca
ggaaatcctatggtgagacgagatatccctgtcactttattgctggccagtatcggtggt
gacttgttcccagagagaagagaactgttagtggatatcctggacattgatctcaggtgg
catatgcacgcagtcagtgacggtgagcgtagacgagttcaactggccatgggattactt
cgtccttggaatattctgttattagacgaggtgacagttgatctcgatgtcctagtacgc
gcgagactgctggactttctccgcaatgagacaaatcagagggaatgccaaattgtaagc
atttttaggttcaacctgattgggttgtataatagtatatatacagacacagcctgctaa
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