Streptomyces leeuwenhoekii: sle_21610
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Entry
sle_21610 CDS
T04414
Symbol
sle_21610
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sle
Streptomyces leeuwenhoekii
Pathway
sle03030
DNA replication
sle03410
Base excision repair
sle03420
Nucleotide excision repair
sle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
sle_21610 (sle_21610)
03410 Base excision repair
sle_21610 (sle_21610)
03420 Nucleotide excision repair
sle_21610 (sle_21610)
03430 Mismatch repair
sle_21610 (sle_21610)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sle03032
]
sle_21610 (sle_21610)
03400 DNA repair and recombination proteins [BR:
sle03400
]
sle_21610 (sle_21610)
Enzymes [BR:
sle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
sle_21610 (sle_21610)
DNA replication proteins [BR:
sle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
sle_21610 (sle_21610)
DNA repair and recombination proteins [BR:
sle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
sle_21610 (sle_21610)
NER (nucleotide excision repair)
GGR (global genome repair) factors
sle_21610 (sle_21610)
MMR (mismatch excision repair)
DNA ligase
sle_21610 (sle_21610)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
sle_21610 (sle_21610)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
NHase_beta_N
Zn_ribbon_TFIIB
DUF8512
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
CQR61622
LinkDB
All DBs
Position
chromosome:complement(2658777..2660972)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTNVPAEAREKHVQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRSLEALEDE
YPELRTPDSPTQKVAGSYATEFTSVEHRSRMLSLDNTFNDDELAAWADRIAKELGDQTYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPERLGGDRVPDLVE
IRGEVYFPMEKFEELNRRLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGMTRLSQAYDLLKSWGLPTSRHNRVVGGLDGVREFIAHYGENRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECP
ECGTPLRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAAAALTKPLEP
ADPPLKDEGDLFDLTVEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATVFANQEGKPKKNA
LAMLENIAAAKQRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAGTEGVG
PIIAASLKEWFAEEWHQEILRKWKAAGVRMAEESSGADEGPRPLAGLTVVVTGTLEHFTR
DGAKEALQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFGILLEQGPE
AAADAALPAGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacgaacgtgcccgccgaggcgcgggagaagcac
gtgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgcggagttcgaccggctgctgcgttccctggaggccctggaggacgag
taccccgagctgcgcacgcccgactcgccgacccagaaggtcgccggctcctacgcgacg
gagttcacctccgtcgagcaccgctcgcggatgctgtcgctggacaacaccttcaacgac
gacgagctcgccgcctgggccgaccggatcgccaaggagctgggcgaccagacctaccac
ttcctgtgcgaactgaaggtcgacggcctcgccgtcaacctcacctacgagcacggccgc
ctcacccgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtc
cgcaccatcgcggagatcccggagcgcctcggcggcgaccgcgtccccgacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcgaggagctcaaccgccggctggtc
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggttccctgcgccag
aaggacccgcgcgtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgcg
ctggagggcttcacgggcatgacccgcctgtcccaggcgtacgacctgctgaagagctgg
ggactgcccacctcccggcacaaccgggtggtcggcggcctcgacggcgtccgggagttc
atcgcccactacggcgagaaccggcactccgtggagcacgagatcgacggggtcgtcgtc
aagctcgacgagatcccgctccagggccggctgggctccacctcgcgcgcgccgcgctgg
gcgatcgcctacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgcgtg
ggcgtgggccgcacgggccgggtcaccccctacgcccaggtggagccggtcacggtggcc
ggctccgaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggcgacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggc
ccggtggccgacctgcgcgacggcagcgagcgggagttcgtgatgccgagcgagtgcccc
gagtgcgggacgccgctgcggcccatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgcacctgccccgcccagttgcgcgagcggctgttctatctcgccggccgcaaggcc
ctggacatcgagcacttcggctatgtggcggcggccgcgctcaccaagccgctggagccg
gcggacccgccgctgaaggacgagggcgacctgttcgacctcaccgtcgagcagttgctg
cccatccgggcctacgtcctcgaccaggacagcggtctgccgaagcgcgacccgaagacc
ggcgaggagaagatcgcgacggtcttcgccaaccaggagggcaagcccaagaagaacgcc
ctggccatgctggagaacatcgccgcggccaagcagcgcccgctggcccgggtcctcacc
ggcctgtcgatccgtcatgtcggcccggtcgccgccgaggcgctcgcccgtgagttccgg
tccatcgaccgcatcgaacaggcgaccgaagaggagctggcgggcaccgagggcgtcggg
cccatcatcgccgcctccctcaaggagtggttcgccgaggagtggcaccaggagatcctg
cgcaagtggaaggcggccggcgtccgcatggcggaggagagctccggcgcggacgagggc
ccccgccccctggccgggctcaccgtcgtggtgaccggcaccctggagcacttcacccgg
gacggcgccaaggaggccctccagacccggggcgcgaaggtgaccggatcggtgtccaag
aagacctcgttcgtcgtggtgggcgacaaccccgggtcgaaatacgacaaggccatgcag
ctcaaggttccggtcctgaacgaggacggattcggcattctgctcgaacaaggacccgag
gcggcggcggacgcggcacttccggccggggaatag
DBGET
integrated database retrieval system
