Staphylococcus lugdunensis HKU09-01: SLGD_01022
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Entry
SLGD_01022 CDS
T01177
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slg
Staphylococcus lugdunensis HKU09-01
Pathway
slg03030
DNA replication
slg03410
Base excision repair
slg03420
Nucleotide excision repair
slg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLGD_01022
03410 Base excision repair
SLGD_01022
03420 Nucleotide excision repair
SLGD_01022
03430 Mismatch repair
SLGD_01022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slg03032
]
SLGD_01022
03400 DNA repair and recombination proteins [BR:
slg03400
]
SLGD_01022
Enzymes [BR:
slg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SLGD_01022
DNA replication proteins [BR:
slg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SLGD_01022
DNA repair and recombination proteins [BR:
slg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SLGD_01022
NER (nucleotide excision repair)
GGR (global genome repair) factors
SLGD_01022
MMR (mismatch excision repair)
DNA ligase
SLGD_01022
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SLGD_01022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Zn_ribbon_NUD
RNA_pol_A_CTD
PTCB-BRCT
HHH
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
ADC87154
LinkDB
All DBs
Position
1082968..1084971
Genome browser
AA seq
667 aa
AA seq
DB search
MDNLQHRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIQIEADHPEYKTTDSPTV
RVGGEAQSSFEKVRHDTPMLSLGNAFNEEDLKRFDQRIRDHIGEVEYMCELKIDGLAVSL
KYENGKFVQGLTRGDGTTGEDITENLRTIHAIPLKLKEPLNFEVRGEAYMPRASFMSLNK
QKEKNNEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFSDFNATTQSDALDELD
RLGFKTNKERECVSDIDGVLAYIEKWTAKRESLAYDIDGIVIKVNDLAQQEEMGYTQKSP
RWAIAYKFPAEEVVTRLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHER
DIRIGDSVVVKKAGDIIPEVVKSIIERRPNDAETYHMPTHCPSCGHKLVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQHELIKDVADIFYLTEEDLLPLERM
GKKKVENLLQAIDKAKSNSLEHLLFGLGIRHLGAKASYVLAEKYETIERLLTVTEDELIS
IHDIGDKLAQSVVTYLENEDIQSLISKLANKDVNMTFKGVKISELAGHPEFQDKTIVLTG
KLEQMTRKEAADWLQLQGAKVTNSVTKNTDLVIAGEDAGSKLTKAQKFGTEIWSESDFIS
KQTEIME
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggataatttgcaacatcgtgttaatgaattacatgatttattaaatcaatatagttat
gaatattatgttcaggataacccctctgttcctgacagcgaatatgataagcttcttcat
gaattaatccaaattgaagcggatcatcctgagtataaaacgactgattctccaacggtg
cgtgttggcggtgaagcccaatcttcattcgaaaaggttagacatgatacaccaatgctt
agtttaggtaatgcctttaatgaagaggatttaaagcgttttgatcaacgcattcgtgat
cacataggtgaggtagaatatatgtgtgagctgaaaattgacggtttagcagtatcttta
aaatatgaaaacggaaaatttgtgcaaggattgacgcgtggagacggtacgactggagaa
gatattactgaaaatttaagaacgatccatgctatccctttgaaattaaaagagccatta
aacttcgaagtacgtggtgaagcatatatgcctagagcttcatttatgtccttaaataaa
caaaaagagaaaaataacgaacaaccgtttgcaaatccaagaaacgctgctgcaggctcg
ttgcggcaattagattcaaagttggcagctaaacgaaagttaagtgtatttttatatagt
gtcaatgatttctctgattttaatgcaacaactcaaagtgatgctttggatgaactggat
cgcttaggcttcaaaacgaataaagaacgtgagtgtgtgagtgatattgatggtgtattg
gcgtacattgaaaaatggactgcgaaacgtgaatcattagcttatgatattgatggtatc
gtgattaaagttaatgatttagcacaacaagaagagatgggttacacgcaaaaatcgcct
agatgggcaattgcatataaatttcctgctgaagaagtagttacacggctgttagacatt
gaattaagcataggaagaaccggagtagtaacacctacggctattctagaaccagttaaa
gtggccggaaccacagtttcacgtgcatcattgcataatgaagatttaatacatgagcgt
gatattcgcattggagatagtgttgttgtgaaaaaagcaggagacattattccagaagtg
gtaaaaagtattatcgagcggcgccccaatgatgccgaaacgtatcatatgccaacgcat
tgtcctagctgcggacataagttagtaagaattgaaggtgaagtagctttacgctgcatc
aatccaaaatgccaggctcaactggttgaaggacttattcatttcgtatctagacaagct
atgaatattgatggtttaggaacgaaaatcatccagcaactctatcagcatgaattgatt
aaagatgttgcagatattttctatttaactgaagaagatttattacccttagaacgcatg
ggtaaaaagaaagtagagaatctattacaagctatcgacaaagctaaatctaattcttta
gaacatttactttttggtcttggtattcgtcatttaggtgccaaagcaagttatgttttg
gctgaaaaatacgagacgatagaacgtttgttaactgttaccgaagatgaacttataagc
attcatgatattggtgacaaacttgcgcaatctgtcgtcacatacttagaaaatgaagat
attcaatcattgatttctaaattagctaacaaagatgttaatatgacttttaaaggggta
aagatttcagaattagctggtcacccagagtttcaagataaaacaattgtattaacgggc
aaactagaacagatgactcgtaaagaagcggctgattggcttcagttacaaggtgcaaaa
gtgaccaatagtgtaactaaaaacacagatttagttattgcaggtgaagatgcagggtct
aaattaacaaaagcacagaagtttggtactgaaatttggtcagaaagtgactttattagc
aagcaaacggaaataatggagtag
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