Sulfurovum lithotrophicum: YH65_08915
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Entry
YH65_08915 CDS
T03877
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slh
Sulfurovum lithotrophicum
Pathway
slh03030
DNA replication
slh03410
Base excision repair
slh03420
Nucleotide excision repair
slh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YH65_08915
03410 Base excision repair
YH65_08915
03420 Nucleotide excision repair
YH65_08915
03430 Mismatch repair
YH65_08915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slh03032
]
YH65_08915
03400 DNA repair and recombination proteins [BR:
slh03400
]
YH65_08915
Enzymes [BR:
slh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YH65_08915
DNA replication proteins [BR:
slh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YH65_08915
DNA repair and recombination proteins [BR:
slh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YH65_08915
NER (nucleotide excision repair)
GGR (global genome repair) factors
YH65_08915
MMR (mismatch excision repair)
DNA ligase
YH65_08915
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YH65_08915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
HHH
DNA_ligase_ZBD
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AKF25479
UniProt:
A0A7U4M241
LinkDB
All DBs
Position
complement(1818388..1820334)
Genome browser
AA seq
648 aa
AA seq
DB search
MTYDEYIANVKTLKKWAYAYYVEDNPVATDEEYDRLYHEVLDYETEHPDKVVEDSPTRRV
GGVVRDEFSKAKHIKRMWSMEDVFSKEEVQEWLDRVEKNVGECDYFCEPKFDGASMNLLY
DDGKLLRAITRGDGVVGEEVTDNVRTIRSVPLLIDYTGLIEIRGEVVIRKDDFEKINEER
LKEGESPFANPRNAAAGSLRQLDSSVTAKRRLVFYPWGVGENMLEYKRLSQKMEFVYAQG
FLRPPYHEACKTIDDIEEFYQFLISKRDEIPMMMDGMVIKVDEIEKQEELGYTVKFPRWM
CAYKFPAVEKVTKIRAITLQVGRTGVITPVAEIEPVNIEGALVSRATLHNFDEIERKDIR
IGDHVIIIRSGDVIPKITKVLVERRTGDEIPVERPTHCPTCGSELLDEGALIKCQNLSCP
DRVVNAIIHFAKKGCMDIDGLGAKIVEQLVKEGKIHDMLDLYSLTYEDLADLEGFKEKKI
NNLLDAIAATKGVPLHRLINAMGIEHIGEVASRALALEFGLGIVDAKYEEIVAIDGIGKE
MANSLLEFMRVNREKVLKLFEIIQPTVEEKVEAKENPFKGKTVVLTGTMSESRGKIKEML
EELGAKVSGSVSRKTDFVIYGEDAGSKLAKAESLGVPTLTEDEMRAML
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgacctatgatgaatatatagccaacgtaaaaacactgaaaaaatgggcctatgcctat
tatgtggaagataatcctgttgctaccgatgaagagtatgacaggctctatcatgaagtg
ctcgattatgagacagagcatcccgacaaagtggtggaggattccccgaccagacgggtt
ggcggtgtagtgcgtgacgagttcagcaaggcaaagcatatcaagcgtatgtggagtatg
gaggatgtcttcagcaaagaagaggtacaggagtggctggaccgggtcgagaagaacgta
ggagagtgtgactacttctgcgaaccgaaattcgacggggcgagtatgaatctgctctat
gacgatggtaagcttctgcgcgccattacgcgtggtgacggggttgtgggggaggaggtg
accgacaatgtgcgtaccatccgctctgtaccgcttctcatcgactatacggggctgata
gagatacgcggtgaagtggtcatccgtaaagatgactttgagaagatcaatgaagagcgt
ctcaaagaaggggagtccccttttgccaatccgcgcaatgccgccgcgggaagtctcagg
cagcttgactcttctgtgacggcaaaacgcagactcgtcttctatccctggggagtcggg
gagaatatgcttgaatacaagaggctttcgcaaaagatggaatttgtctatgcgcagggc
tttttgaggccgccataccatgaggcatgcaaaactattgacgacatagaggaattctat
caattcctcatctccaaacgtgacgagatccccatgatgatggatggaatggtcataaag
gttgatgagatcgaaaaacaggaagagctcgggtatacggtgaagttccccaggtggatg
tgtgcctacaaattcccggctgtcgaaaaggttacgaaaatcagggcgatcacgctccag
gtcggccgtacgggagtgatcacccctgtggctgagatagaaccggtgaacatagaagga
gcgctggtcagccgtgccactttgcataattttgacgagatcgagcgtaaagacatccgt
atcggtgaccatgtgatcatcatacgaagcggagatgtaattcccaagatcaccaaagta
ttggtggaaagaagaaccggggatgaaataccggtcgaacgaccgacgcactgtcctacc
tgcggaagtgaattgctggatgagggtgctctgatcaaatgccagaatctctcctgccct
gacagagtggtcaacgccatcatccattttgccaagaaaggctgtatggatatcgacgga
cttggagccaagatcgtcgaacagctggtaaaagaggggaagatacacgatatgctggac
ctctacagcctgacctatgaagacctggctgatcttgagggtttcaaagagaagaagatc
aacaatctgctcgatgctattgctgcgacgaaaggggtaccgctccacaggctcatcaac
gcgatgggcattgagcatatcggcgaagtggcaagcagggctctggcgctggaattcggt
cttggtatcgttgatgcgaagtatgaagagatcgtagccatcgacggtatcggtaaagag
atggccaattccttattggaatttatgcgggtcaacagggaaaaggtacttaaacttttt
gaaataatacagcctaccgttgaagagaaagtggaagccaaagagaaccctttcaaaggc
aagactgtagtgctgacaggaacaatgagtgagagccgtgggaagatcaaggagatgctt
gaggagttgggagcaaaagtaagtggatctgtatccaggaaaactgattttgtgatctat
ggagaagatgccgggtcaaaattggcgaaagcggaaagtctgggagtaccgaccctgacg
gaagatgaaatgagggcaatgctgtga
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