Spirosoma linguale: Slin_2539
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Entry
Slin_2539 CDS
T01156
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sli
Spirosoma linguale
Pathway
sli03030
DNA replication
sli03410
Base excision repair
sli03420
Nucleotide excision repair
sli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Slin_2539
03410 Base excision repair
Slin_2539
03420 Nucleotide excision repair
Slin_2539
03430 Mismatch repair
Slin_2539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sli03032
]
Slin_2539
03400 DNA repair and recombination proteins [BR:
sli03400
]
Slin_2539
Enzymes [BR:
sli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Slin_2539
DNA replication proteins [BR:
sli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Slin_2539
DNA repair and recombination proteins [BR:
sli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Slin_2539
NER (nucleotide excision repair)
GGR (global genome repair) factors
Slin_2539
MMR (mismatch excision repair)
DNA ligase
Slin_2539
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Slin_2539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
Nlig-Ia
5_3_exonuc
Zn_ribbon_NUD
HVO_2753_ZBP
Zn_ribbon_Top1
Zn_ribbon_ACC
Motif
Other DBs
NCBI-GeneID:
8726284
NCBI-ProteinID:
ADB38557
UniProt:
D2QGP9
LinkDB
All DBs
Position
complement(3063073..3065163)
Genome browser
AA seq
696 aa
AA seq
DB search
MNPEEQIIDLTNRLNQYNFQYYQNSISEVDDFTFDKLLADLTALENQYPEFRQPDSPTAR
VGGTISKEFKTVYHRFPMLSLGNTYSEEDLIEFDKRVQKGLNGQTYEYICELKFDGVALS
LTYENGVLVQGATRGDGVRGDDITNNIRTIRTVPLRIGAGHKATHTQPESAPAVAALPAL
FEVRGEGFLPLAEFDRINKEREDIGEPLLANPRNAASGTFKQQDSGAVAKRRLDCYLYSF
LSDTDIFQTHEESLVAMNAWGFNVSPTWRKCTDIQEVMAYINEWETKRFDLPLGTDGIVI
KVNRYDQQRDLGYTAKSPRWAIAFKYKAMAASTELNGIQYQVGRTGAVTPVALLTPVLLA
GTIVKRASLHNANEIERLGVMMHDTVFVEKGGEIIPKITGVDLNRRTDKSQPIVYPTTCP
ACGTALVRKEGEAHFYCPNEQGCPPQRQARFEHFIQRRAMNIESLGEGKIELLIDRGLVQ
TPADLYDLKATDLLGIEKVFLVEETGKKRVVSFREKTVENILTAIERSKSQPFANVLFGL
GIRYVGNTTAEKLVDYFGSMDAIMNATQEQLLAVPDTGPRIAESVVAWFGDTANQEFVER
LRAAGLQFVGEKKVVEQEGDSLTGKTFLYTGTFANFSREELESRIEANGGKLLSGISKKL
NYLIVGENAGPSKVEKAKKLNVPMIGEDEFMAMLVV
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaatccggaagaacagatcattgacctaacgaatcgactgaatcagtacaattttcaa
tattaccagaatagtatctcggaagtagatgactttaccttcgataagttacttgccgac
ttaacggctctggaaaatcagtaccctgaatttagacagcccgactcgccaacggcccgg
gtggggggtacaatcagcaaggaattcaagaccgtttatcaccgctttcccatgctttcg
ctggggaatacgtattctgaagaagacctcatcgagttcgacaaacgtgtgcaaaaaggc
ctcaacgggcaaacgtacgaatacatctgtgagctgaaatttgatggtgtagccctcagc
ctgacctacgaaaatggggtactggtacagggtgcaacccgtggtgatggcgttcgtggt
gatgatattaccaacaatatccgaaccatccgaacggtccctctgcgaataggcgctgga
cacaaggccacgcatacgcaaccagaatctgccccagcggtggccgcacttccagccctt
ttcgaagtgcggggcgaaggatttttgccgttggcggagttcgatagaatcaacaaggaa
cgggaagatattggtgagccgttgctggcaaacccgagaaatgcagcctccggaacgttt
aagcaacaggactccggtgcggtcgccaaacgtcggctcgattgttatctgtattcgttt
ttatccgatacagatatttttcaaacccacgaagagagcctggtggccatgaatgcctgg
ggcttcaacgtgtcgccaacctggcggaagtgtaccgacattcaggaggtgatggcgtac
attaatgaatgggaaaccaaacgcttcgatctgccacttggcaccgatggcatcgtgatt
aaggtgaatcgctacgaccagcaacgagaccttggctacaccgccaaaagcccgcgctgg
gccatcgcctttaaatataaagcaatggccgccagtaccgaacttaacggcattcagtat
caggtgggccggacgggagccgtcacgcccgttgcgctgctgacgcccgtattactggcc
ggaacaatcgtgaagcgggcttccctgcacaacgccaacgaaattgagcggctgggcgta
atgatgcacgacaccgtttttgtggaaaaaggaggggaaatcattccgaaaataacgggt
gtcgacctgaaccggcgcaccgataagagccagccgattgtttatcctaccacctgcccc
gcttgtggaacggcacttgtccggaaagaaggggaagcgcatttttattgccccaatgag
cagggatgcccgccccagcggcaggcccgatttgaacatttcattcagcgacgggctatg
aatatcgaaagcctgggcgaggggaaaattgaactcctcatcgaccgtgggctggtgcag
acccccgccgatttgtatgacctgaaggcgacggacctgctgggtatcgaaaaggtgttt
ctggtggaggagaccggcaaaaaacgcgttgtcagcttccgcgaaaaaacggttgagaac
atactcacggccatagagcgctcaaaatcgcagccttttgccaatgttttgtttgggttg
ggcatccgttacgtgggcaataccaccgccgagaagctggttgattacttcgggtcgatg
gatgccattatgaatgccacgcaggagcagttgctggccgttccggatacgggtccgcgt
attgccgaaagcgtcgtcgcctggtttggcgataccgccaaccaagagtttgtggaacgg
ctcagagcggcaggactacagtttgtcggtgagaaaaaagtagtggagcaggaaggtgac
tcgttaacgggcaagacatttctgtataccggaaccttcgccaattttagtcgcgaggag
ttggaatcccggattgaggccaatggtggtaaactgctcagtggcatctcgaaaaagctg
aactacctgatcgtaggcgaaaatgccgggccatctaaggttgaaaaagcgaagaaacta
aacgttcccatgattggcgaagacgagtttatggcaatgctggttgtataa
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