Streptomyces liangshanensis: HA039_07405
Help
Entry
HA039_07405 CDS
T07519
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slia
Streptomyces liangshanensis
Pathway
slia03030
DNA replication
slia03410
Base excision repair
slia03420
Nucleotide excision repair
slia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HA039_07405 (ligA)
03410 Base excision repair
HA039_07405 (ligA)
03420 Nucleotide excision repair
HA039_07405 (ligA)
03430 Mismatch repair
HA039_07405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slia03032
]
HA039_07405 (ligA)
03400 DNA repair and recombination proteins [BR:
slia03400
]
HA039_07405 (ligA)
Enzymes [BR:
slia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HA039_07405 (ligA)
DNA replication proteins [BR:
slia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HA039_07405 (ligA)
DNA repair and recombination proteins [BR:
slia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HA039_07405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HA039_07405 (ligA)
MMR (mismatch excision repair)
DNA ligase
HA039_07405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HA039_07405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QIQ02146
UniProt:
A0A6G9GVP2
LinkDB
All DBs
Position
1749763..1751892
Genome browser
AA seq
709 aa
AA seq
DB search
MGAMTTTPAAVADASAYARAVEEARTAAAAYYAGGESAVDDDTYDRLVRGIAAYEKEHPD
ETLADSPTGKVAGGAATGDVPHSAPMLSLDNVFSAEQLVAWAASLERRLGRPVEAWSVEP
KLDGLAIAARYEHGRLTRLVTRGDGTAGEDVSHAVGSVVGLPGRLTEPVSLEVRGEVLMT
REQFERGNALRTEHGGAPFANARGAAAGTLRAKDRPYRAETTFYGYGALPLPSSGPLGEL
LERWPHSQVLEYVTGLGVHTAAATDVAPRTLATVAEVQSRVEEIAGLRAELPFGIDGIVI
KADLAEDQRAAGAGSRAPRWAIAYKLPAVEKITRLLAVEWNVGRTGVVAPRAVLEPVLID
GSTVTYATLHNPGDITRRDLRLGDRVMVHKAGDIIPRVEAPVVRLRTGEERPIVFPEDCP
QCGGEIDTSGQRWRCVRGRDCRLVASISYAVGRDQLDIEGLGATRVVQLVEAGLLTDFAD
LFVLRREQLLALDRMGVTSTDNLLAAVEGAKAQPLSRVLAALGVRGTGRSMSRRIARHFA
TMDRLRAADAEAVRRVDGIGTEKAPLIVAELAELAPLIDKLVAAGVNMTEPGATPPPDGA
EGGPEAADAPEVALPGGPLAGMTVVVTGAMTGPLAKLSRNRMNELIERAGGTSSSSVSKR
TTLLVAGENAGTKRAKAEALGVRVADPDEFAAMVAELLTDDQGDPDDRP
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggagccatgacgacaacacctgccgcagtcgccgatgcctccgcgtacgcccgggcc
gtggaggaggccaggacggccgccgccgcgtactacgcgggcggggagagcgccgtggac
gacgacacgtacgaccgtctggtgcgcgggatagccgcgtacgagaaggagcaccccgac
gagacgctggccgactccccgaccggcaaggtcgccggcggcgccgcgacgggcgacgtg
ccgcactcggcgccgatgctgtccctggacaacgtgttctccgccgagcagctcgtcgcg
tgggcggcctcgctggagcggcggctcggccggccggtggaggcctggagtgtggaaccg
aagctggacggcctggcgatcgcggcccgttacgagcacgggcggctgacccggctggtc
acccggggcgacggcacggcgggcgaggacgtctcgcacgccgtcggttccgtggtgggc
cttcccggccgactcaccgagccggtcagcctggaggtgcgcggcgaggtgctgatgacc
cgtgagcagttcgagcggggcaacgcgttgcgtacggaacacggcggcgccccgttcgcc
aacgcgcgcggcgccgcggccggcacactgcgggcgaaggaccgtccgtaccgcgcggag
acgacgttctacggatacggcgcgctgccgctgccgtcgtcaggacccctcggcgagctg
ctggagcgatggccgcacagccaggtgctggagtacgtgaccgggctgggcgtccacacc
gccgccgcgacggacgtggcgccgcgcacactcgccacggtggcggaggtgcagagcagg
gtcgaggagatcgcggggctgcgggcggagctgccgttcggcatcgacggcatcgtgatc
aaggccgatctcgcggaggaccagcgcgcggccggtgcgggatcgcgggccccgcgctgg
gcgatcgcgtacaaactcccggcggtggagaagatcacgcgcctgctggccgtggagtgg
aacgtcggcaggacgggcgtcgtcgcgccccgcgcggtcctggagccagtactgatcgac
gggtcgacggtcacgtacgcgacgttgcacaaccccggcgacatcacccgccgcgacctg
cgcctcggcgaccgggtgatggtccacaaggcgggcgacatcatcccgcgggtggaggcg
ccggtggtgcgtctgcggaccggtgaggagcggccgatcgtcttccccgaggactgcccg
cagtgtggtggggagatcgacacctccgggcagcggtggcggtgtgtgcggggccgtgac
tgccgtctggtggcgtccatctcgtacgcggtggggcgggaccagctcgacatcgagggg
ctgggggcgacgcgggtcgtccagctcgtggaggccggtctgctcacggacttcgccgat
ctgttcgtcctgcggcgggagcagttgctggcgctggaccgcatgggcgtgaccagtacg
gacaatctgctcgccgccgtcgagggggcgaaggcgcagccgctgtcgcgcgtgctggcg
gcgctcggtgtgcggggcacgggccggtccatgtcccgccgtatcgcacggcacttcgcc
acgatggaccggctgagagcggcggacgcggaggcggtacggagggtcgacggcatcggg
acggagaaggcgcccctgatcgtcgccgagctggcggagctggccccgctcatcgacaag
ctggtggcggccggggtgaacatgacggagccgggggcgacgccccctccggacggggcg
gagggcggaccggaggcggcggacgcgcccgaagtggctttgcccgggggcccgttggcc
gggatgacggtggtggtgacgggtgcgatgaccggcccgctggcgaagctgtcgcggaac
cggatgaacgagctgatcgagcgggccggtggtacgtcctcgtccagtgtgtccaagcgg
acgacgctgttggtcgcgggggagaacgcgggcacgaagcgggccaaggcggaggcgctg
ggggtgcgggtggcggatccggacgagttcgccgcgatggtggcggagttgctcacggac
gaccagggagatccggacgacaggccctag
DBGET
integrated database retrieval system
