Streptomyces liangshanensis: HA039_09560
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Entry
HA039_09560 CDS
T07519
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slia
Streptomyces liangshanensis
Pathway
slia03030
DNA replication
slia03410
Base excision repair
slia03420
Nucleotide excision repair
slia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HA039_09560 (ligA)
03410 Base excision repair
HA039_09560 (ligA)
03420 Nucleotide excision repair
HA039_09560 (ligA)
03430 Mismatch repair
HA039_09560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slia03032
]
HA039_09560 (ligA)
03400 DNA repair and recombination proteins [BR:
slia03400
]
HA039_09560 (ligA)
Enzymes [BR:
slia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HA039_09560 (ligA)
DNA replication proteins [BR:
slia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HA039_09560 (ligA)
DNA repair and recombination proteins [BR:
slia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HA039_09560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HA039_09560 (ligA)
MMR (mismatch excision repair)
DNA ligase
HA039_09560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HA039_09560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
UPF0758_N
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QIQ02528
UniProt:
A0A6G9GW91
LinkDB
All DBs
Position
complement(2273925..2276210)
Genome browser
AA seq
761 aa
AA seq
DB search
MAGENHAQPASVPAQAREKHAQLAEQIEEHRFRYYVKDQPVVSDAEFDRLLRTLEALEDE
YPELRTPDSPTQKVSGAYETDFTAVQHRERMLSLDNAFDDEELAAWADRVAKDVGTTDYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIQEIPHRLAGDRIPALVE
IRGEVYFPMDAFQELNARLVEAGDKPFANPRNAAAGSLRQKDPKITATRPLHMVVHGIGA
REGFDIDRLSHAYELLREWGLPTARHNRVVDGLEQVREFITTFGERRHSVEHEIDGVVVK
LDEISLQGRLGSTSRAPRWAIAWKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQEVVKSKGVWIGDTVVLRKAGDVIPEILGPVVDLRPEDAYEFEMPAECPE
CGTALRAMKEGDIDLRCPNARSCPAQLRERLFYLGSRKSLDIENFGYVAAAALTRPLEPA
TPPLLDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDAKTGEDKIVTVFANQKGEPKTNTL
AMLEHIAAARQRPLARIITGLSIRHVGPVASEALAREFRSLDRIEQASQEELAAVEGVGP
TIAASVKEWFEVDWHREILRKWRAAGVRTEDEGGGEDEGPRPLAGLTVVVTGTLERFTRD
GAKEALQALGAKVAGAVSKKTAFVVAGENPGSKYDKAMQLKVPVLDEAGFGILLEQGPEA
ATEAAVTPEDPAGTPEATVAEEAPAKAAGQAAEEDPAKAAE
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaaaaccacgcacagcccgcatcggtgcccgcgcaggcgcgcgagaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggaccagccg
gtcgtcagcgacgccgagttcgaccggctgctgcgcaccctggaggcgctggaggacgag
tatcccgagctgcggacgccggactcgcccacccagaaggtctcgggggcgtacgagacg
gacttcacggccgtccagcaccgcgagcgcatgctgtcgctggacaacgcgttcgacgac
gaggagctggccgcctgggccgaccgggtcgccaaggacgtcggcaccaccgactaccac
ttcctgtgcgagctcaaggtggacggcctcgcggtcaacctcacctacgagcacggcagg
ctgacccgcgccgccacccgcggcgacgggcggacgggcgaggacatcacgcccaacgtc
cgcacgatccaggagatcccgcaccggctggcgggggaccggatccccgccctggtcgag
atccgcggcgaggtctacttcccgatggacgcgttccaggagctgaacgcacggctggtg
gaggccggggacaagcccttcgccaacccccgtaacgcggcggcgggttcgctgcgccag
aaggaccccaagatcaccgccacccgcccgctgcacatggtcgtgcacggcatcggcgcg
cgcgagggcttcgacatcgaccgcctctcgcacgcctacgagctgctgagggagtggggc
ctgcccacggcccggcacaaccgggtggtcgacggcctggagcaggtccgggagttcatc
accaccttcggcgagcggcgccactccgtggagcacgagatcgacggcgtggtcgtcaag
ctcgacgagatctccctccagggccgcctgggctccacctcgcgcgccccgcgctgggcg
atcgcgtggaagtacgcgccggaggaggtcaacaccaagctgctcaacatccgggtgggc
gtgggccgcacgggccgcgtcacgccgtacgcgcaggtggagccggtcacggtcgcgggc
tccgaggtcgagttcgccacgctgcacaaccaggaagtcgtgaagtccaagggcgtctgg
atcggcgacacggtggtcctgcgcaaggcgggggacgtcatcccggagatcctcggcccg
gtggtggacctgcgccccgaggacgcgtacgagttcgagatgcccgccgagtgccccgag
tgcggtacggcgctgcgcgcgatgaaggagggcgacatcgacctccgctgccccaacgcc
cgctcctgccccgcccagttgcgcgagcggctgttctacctcggcagccgcaagagcctg
gacatcgagaacttcggctatgtggccgccgccgccctgacgaggccgctggagcccgcc
acgccgccgctgctggacgagggcgacctgttcgacctgaccgtcgatcagctgctgccc
atcaaggcgtatgtcctggaccaggacagcgggttgcccaagcgcgacgcgaagaccggc
gaggacaagatcgtcacggtcttcgccaaccagaagggcgagccgaagaccaacaccctg
gcgatgctggagcacatcgccgccgcccggcagcgcccgctggcccggatcatcacgggt
ctgtcgatccgtcatgtcggcccggtcgcctccgaggcgctggcccgcgagttccgctcc
ctcgaccggatcgagcaggcctcccaggaggagctggccgccgtcgagggcgtcgggccg
accatcgccgcctccgtcaaggagtggttcgaggtcgactggcaccgcgagatcctgcgc
aagtggcgggcggcgggcgtccgtacggaggacgagggcggcggcgaggacgagggcccg
cggccgctggccggcctcacggtcgtggtcaccggcaccctggagcggttcacccgcgac
ggggcgaaggaggcgctccaggccctcggcgcgaaggtcgccggcgccgtgtcgaagaag
acggcgttcgtggtggcgggcgagaatcccgggtccaagtacgacaaggccatgcagctc
aaggtgccggtcctggacgaggcgggattcggcattctgctcgaacagggcccggaggcc
gccacggaggccgcggtgacccccgaggaccccgccgggaccccggaggccaccgtggcg
gaggaagccccggcgaaggcggccgggcaggcggccgaggaggaccccgcgaaggcggcc
gagtag
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integrated database retrieval system
