Sulfuricaulis limicola: SCL_1027
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Entry
SCL_1027 CDS
T05241
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
slim
Sulfuricaulis limicola
Pathway
slim03030
DNA replication
slim03410
Base excision repair
slim03420
Nucleotide excision repair
slim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCL_1027
03410 Base excision repair
SCL_1027
03420 Nucleotide excision repair
SCL_1027
03430 Mismatch repair
SCL_1027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slim03032
]
SCL_1027
03400 DNA repair and recombination proteins [BR:
slim03400
]
SCL_1027
Enzymes [BR:
slim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCL_1027
DNA replication proteins [BR:
slim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCL_1027
DNA repair and recombination proteins [BR:
slim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCL_1027
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCL_1027
MMR (mismatch excision repair)
DNA ligase
SCL_1027
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCL_1027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
BAV33342
UniProt:
A0A1B4XEW7
LinkDB
All DBs
Position
1025319..1027331
Genome browser
AA seq
670 aa
AA seq
DB search
MSSAGKPRQRAAELRQEINHHNYRYYILDSPLISDAQYDKLLRELQELEAKYPDLITPDS
PTQRVGAAPSQEFGEVRHSIPMTSMDNAFSDEEVGEWDRRVRKGLETEGDVAYTAEPKFD
GTSISLRYEKGMLVQAGTRGDGETGEDVTVNVRTIKTVPLHLQGKGWPDILEVRGEVVIP
KKDFERLNAEQLKQGGKIFANPRNAAAGSLRQLDPRITAARPLSFFPWGLGQTSKPVAPR
YSEVVKYLKEWGFRTTEFFHVAKGADECLKFYREMLGKREDLPFEIDGVVYKLDDLAARE
RLGYTARAPRWAIAHKLPAQEETTVVEDILASVGRTGVITPVAVLKPVAVSGVTVTHATL
HNQDELERKDVRIGDTVIVRRAGDVIPEVVGVIKDKRPRGTRKWHMPKKCPVCDSEVIRE
EEEAAHRCMGGLVCSAQRMGALLHFASRHAMDIEGLGDKLVQQLVEKGMVKTVADIYRLK
KDVLADLERMAEKSAQNLLDQIEKSKTTTLARFLHALGIPQVGEATAQLLVDHFGALDDI
MDAKRETLEQVHGIGPAMAEDIHSFFHEKHNREVIRALIKAGIHWPKPVKARKDSPLAGK
VFVLTGGLASMSRDEARRKLQAFGAKVTDSVSKKTDYVVVGEDPGSKADKAEKLGITMLD
EKGFLKLIGQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgcgggaaaaccgcggcagcgggccgcggaattacgccaggaaatcaatcac
cacaattaccgttattacattctcgacagcccgctcatctccgacgcgcaatatgacaag
ctcctacgcgaactgcaggaacttgaagccaaataccccgacctgatcacgcccgattcg
ccgacccagcgggtcggcgccgcgccttcgcaggagtttggcgaggtccggcattccatt
cccatgacctccatggacaacgccttctccgacgaggaggtgggcgaatgggaccggcgc
gtgcgcaaggggcttgagaccgaaggcgatgttgcctataccgccgaacccaagttcgac
ggcacctcgatcagcctgcgttatgagaaaggcatgctggtgcaggccggcactcgcggc
gacggcgagaccggcgaggacgtgacggtcaacgtgcgcaccatcaagaccgtgccgctg
catctgcagggcaaaggctggccggacattctcgaggtgcgcggtgaagtggtcatcccg
aaaaaggatttcgagcgcctcaacgccgaacaattgaaacagggcggcaagattttcgcc
aatccccgcaacgccgccgctggcagcctgcgccagcttgacccgcgcatcacggccgcg
cggccactgagcttcttcccctggggcctgggccagacgtccaaaccggtcgcgccacgt
tattccgaagtcgtgaaatatctcaaggagtggggattccgcaccacggagtttttccat
gtcgcaaagggcgcggatgagtgtctcaagttttaccgcgagatgctcggcaagcgcgaa
gacctgccatttgaaatcgatggcgtcgtgtacaaactggacgatcttgccgcgcgcgag
cgcctgggttacacggcacgcgcgccgcgttgggccatcgcgcacaagctgccggcgcag
gaagaaaccaccgtggtcgaggacatcctggcctcggtcggacgtaccggggtcatcacg
ccggtggcggtgctgaagccggtggcggtgagtggcgtcaccgtgacgcacgccacgctg
cacaaccaggacgagctcgaacgcaaggacgtgcgcatcggcgacaccgtgatcgtgcgc
cgcgccggcgacgtgattcccgaggtcgtgggcgtcatcaaggacaagcgcccccgcggc
acgcgcaagtggcacatgccgaagaaatgcccggtctgcgattcagaagtgatccgcgaa
gaggaggaagctgcgcaccgctgcatgggtggcctggtttgctccgcgcagcgcatgggc
gcgctactgcattttgcctcgcgccatgccatggacatcgagggcctgggcgacaagctg
gtgcagcaactggtggaaaagggcatggtgaaaaccgtggccgatatctaccggctcaaa
aaagacgtgctggccgatcttgagcgtatggctgaaaaatcagcgcagaacctgctggac
cagatagagaagagcaaaaccactacgctggcccgttttcttcacgcactcggcatcccg
caggtgggcgaggccacggcgcagctgctggtggatcatttcggcgcgctcgacgacatc
atggatgccaaacgcgaaaccctggagcaggtccacggcatcggcccggccatggccgag
gacatccacagcttctttcacgaaaagcacaaccgcgaagtcatccgcgccctgatcaag
gccggcattcactggcccaaacccgtgaaggcgaggaaggattcaccgctcgccggcaag
gtattcgtcctcaccggcggcctggccagcatgagccgcgacgaagcccggcgcaaactg
caagcattcggcgccaaggttaccgacagcgtgtcgaaaaaaaccgattatgtggttgtc
ggcgaagaccccggctcgaaggccgacaaggcggagaagctggggatcacgatgctggat
gagaagggattcctaaagttgattggtcaatag
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integrated database retrieval system
